PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK20163.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | WRKY | ||||||||
Protein Properties | Length: 141aa MW: 16150.5 Da PI: 9.6053 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.3 | 4.8e-31 | 32 | 91 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rsaedp+++++tYegeH h+ PK20163.1 32 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApNCPVKKKVQRSAEDPSLLVVTYEGEHMHN 91 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 25.293 | 27 | 93 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.9E-29 | 27 | 91 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.19E-26 | 28 | 91 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.7E-35 | 32 | 92 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-25 | 33 | 90 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
XEINYKSKVS TIYVRTDSSS DDHHDHNKTL VVKDGYQWRK YGQKVTRDNP SPRAYFKCSF 60 APNCPVKKKV QRSAEDPSLL VVTYEGEHMH NNSHNIKKSS MVRSLANNST ITLDHHDHGP 120 VLHQFLVNQM ASSLTKDSNF X |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-21 | 26 | 91 | 6 | 72 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Positively modulates defense-related gene expression and disease resistance. {ECO:0000269|PubMed:12068113}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and pathogens. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:12068113}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009137737.1 | 1e-50 | PREDICTED: WRKY transcription factor 18 | ||||
Refseq | XP_010101038.1 | 2e-49 | probable WRKY transcription factor 40 isoform X1 | ||||
Refseq | XP_024024355.1 | 1e-49 | probable WRKY transcription factor 40 isoform X2 | ||||
Swissprot | Q9C5T4 | 3e-47 | WRK18_ARATH; WRKY transcription factor 18 | ||||
TrEMBL | A0A2P5FN96 | 3e-56 | A0A2P5FN96_TREOI; WRKY domain containing protein | ||||
STRING | Bra019123.1-P | 2e-49 | (Brassica rapa) | ||||
STRING | XP_010101038.1 | 6e-49 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF973 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31800.2 | 2e-48 | WRKY DNA-binding protein 18 |