PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK19500.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family SBP
Protein Properties Length: 272aa    MW: 30403.5 Da    PI: 9.0473
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK19500.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.41.5e-4143119278
                -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
        SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                C v+gC++dl+++++yhrrhkvCe+hsk+p+v+++g+eqrfCqqCsrfh+l efDeekrsCr+rL++hn+rrrk+q+
  PK19500.1  43 CLVDGCNSDLTKCRDYHRRHKVCETHSKTPKVTIAGREQRFCQQCSRFHSLGEFDEEKRSCRKRLDGHNRRRRKPQP 119
                **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.6E-3436104IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.04340117IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.53E-3941122IPR004333Transcription factor, SBP-box
PfamPF031105.8E-3143116IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MDDGSKFKWK ELGASDVESS SSSMPLKRTR GSSSSNGIQV PSCLVDGCNS DLTKCRDYHR  60
RHKVCETHSK TPKVTIAGRE QRFCQQCSRF HSLGEFDEEK RSCRKRLDGH NRRRRKPQPE  120
PMSLSSGRFF SSYQGTRFSP FHNPQAFPNA AMASAAVTTK QEFSDIRKNP LTGSLNQSYN  180
SSSGGGKEFS FLQSSSCTHS EASSVTQSLM DSNSALNNCA NSHRFFSNNN WLHRDSVDSS  240
CALSLLSSTT PTDTKEIGLD HMLQHQHQHQ HQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-3031116184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199116KRSCRKRLDGHNRRRRKP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010090650.11e-101teosinte glume architecture 1
TrEMBLA0A2P5B9521e-135A0A2P5B952_PARAD; SBP-box transcription factor
STRINGXP_010090650.11e-100(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25913378
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-49SBP family protein