PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK19314.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

NAC

Protein Properties

Length: 729aa MW: 82908.4 Da PI: 5.6599

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK19314.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	182.1	1.4e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdeelv +yLk+k++g+k++l e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk gyWkatgkd++v s +++ PK19314.1 6 LPPGFRFHPTDEELVAYYLKRKINGRKIDL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKGGYWKATGKDRKVNS-QTR 103 79**************************.99***********6434555777**********************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrl 128 +vg+kktLv+y+grap+g++tdWvmheyrl PK19314.1 104 AVGMKKTLVYYRGRAPHGSRTDWVMHEYRL 133 9*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.7E-64	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	62.141	6	156	IPR003441	NAC domain
Pfam	PF02365	4.6E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 729 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIDLEIIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRKVNS QTRAVGMKKT LVYYRGRAPH 120 GSRTDWVMHE YRLDERECEI PSGLQDAYAL CRVFKKSAVG PKIGEQYYGS TSTSTTNHMS 180 QNHHQILNHN NRNINMTSDH SSSIEIYSDG RCDDFESNNY SMLPPDTCSA PKSMMQRYRP 240 EYHHSHKWTN FLSNDDNFNY NFGTTSTSSF QNLGGISYPP SKVDVALECA RLQHRLTLPP 300 LEVEDFGQAS AKINEFKAMQ SSAHQHQAIL ETTANDTDIL QEILSVAHVS QELINQPSSI 360 FADDASMWGV SNVNIGTAAD DFSFMVGQDT QYNQSLLENN HMNSLRFVDN SWEDHLARSI 420 EIGDFDEDFK SDQRSAENLR WIGMSSKIAE ESFVEEQKIV PFENISSYRR EEHADNNGEA 480 CHQSSCNNKE LNEENEQTND QFSLEFINSD PNENLIEEGN MDEYSSSPSF EVVEEIKVNH 540 GLFVSTRQVA ETFFHQSVPS QTVQVHLNPV LLLSNHFLVG SKGTHDINFA RKSDQTLTHD 600 RDQDSFTTVI MKYNKNIVEM TKSMMVAWWT ILSTIISMIS LSWTSVEQVE KINVFGTSSS 660 TRAGVFEENE MGSDVSFFIK QRKRGVGAKL CNETGKVSVV NIRGANNLSV FLKKIGVFLT 720 ITLALCTMW

Sequence ? help Back to Top

Protein Sequence Length: 729 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIDLEIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKGGYWK ATGKDRKVNS QTRAVGMKKT LVYYRGRAPH  120
GSRTDWVMHE YRLDERECEI PSGLQDAYAL CRVFKKSAVG PKIGEQYYGS TSTSTTNHMS  180
QNHHQILNHN NRNINMTSDH SSSIEIYSDG RCDDFESNNY SMLPPDTCSA PKSMMQRYRP  240
EYHHSHKWTN FLSNDDNFNY NFGTTSTSSF QNLGGISYPP SKVDVALECA RLQHRLTLPP  300
LEVEDFGQAS AKINEFKAMQ SSAHQHQAIL ETTANDTDIL QEILSVAHVS QELINQPSSI  360
FADDASMWGV SNVNIGTAAD DFSFMVGQDT QYNQSLLENN HMNSLRFVDN SWEDHLARSI  420
EIGDFDEDFK SDQRSAENLR WIGMSSKIAE ESFVEEQKIV PFENISSYRR EEHADNNGEA  480
CHQSSCNNKE LNEENEQTND QFSLEFINSD PNENLIEEGN MDEYSSSPSF EVVEEIKVNH  540
GLFVSTRQVA ETFFHQSVPS QTVQVHLNPV LLLSNHFLVG SKGTHDINFA RKSDQTLTHD  600
RDQDSFTTVI MKYNKNIVEM TKSMMVAWWT ILSTIISMIS LSWTSVEQVE KINVFGTSSS  660
TRAGVFEENE MGSDVSFFIK QRKRGVGAKL CNETGKVSVV NIRGANNLSV FLKKIGVFLT  720
ITLALCTMW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	2e-57	1	162	15	174	NAC domain-containing protein 19
3swm_B	2e-57	1	162	15	174	NAC domain-containing protein 19
3swm_C	2e-57	1	162	15	174	NAC domain-containing protein 19
3swm_D	2e-57	1	162	15	174	NAC domain-containing protein 19
3swp_A	2e-57	1	162	15	174	NAC domain-containing protein 19
3swp_B	2e-57	1	162	15	174	NAC domain-containing protein 19
3swp_C	2e-57	1	162	15	174	NAC domain-containing protein 19
3swp_D	2e-57	1	162	15	174	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020414577.1	0.0	NAC domain-containing protein 86 isoform X3
TrEMBL	A0A2P5FJ37	0.0	A0A2P5FJ37_TREOI; NAC domain containing protein
STRING	EMJ16200	0.0	(Prunus persica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4421	34	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-165	NAC domain containing protein 28