PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK19243.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HSF
Protein Properties Length: 238aa    MW: 27187.2 Da    PI: 6.634
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK19243.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.89.4e-35291202102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y ++ed++++e+isw+++g++fvv+++ efa+++Lp+ Fkhsnf+SFvRQLn+YgF+kv +++         weF +++F+kg+k++l++i+
     PK19243.1  29 FLLKTYMLVEDPATDEVISWNAQGTAFVVWQPAEFARDLLPTLFKHSNFSSFVRQLNTYGFRKVATNR---------WEFCNDKFRKGEKDHLCEIR 116
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
     PK19243.1 117 RRKA 120
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.1E-3622113IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.9E-3224118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-5025118IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.2E-3129118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-192952IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-196779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000569.3E-198092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDHHNNDHVL ISDQKGLLEY MRKSSPPPFL LKTYMLVEDP ATDEVISWNA QGTAFVVWQP  60
AEFARDLLPT LFKHSNFSSF VRQLNTYGFR KVATNRWEFC NDKFRKGEKD HLCEIRRRKA  120
WANNNNKQQS TTTAATATIE EEGSVAAAVG GRGGHVVVVE SDEDQRSSST SSSSELFTTL  180
VDENKRLKKE NGVLSFELRN MKNKCRELLD LVAKYENDHD DQRPKLFGVR LEVEGEVX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B9e-21291184104Putative transcription factor
5d5x_B9e-21291184104Putative transcription factor
5d5x_E9e-21291184104Putative transcription factor
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00305DAPTransfer from AT2G41690Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024189461.11e-110heat stress transcription factor B-3
SwissprotO222307e-70HSFB3_ARATH; Heat stress transcription factor B-3
TrEMBLA0A2P5AG931e-114A0A2P5AG93_PARAD; Heat shock transcription factor
STRINGXP_008244246.11e-102(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41690.11e-61heat shock transcription factor B3