PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK18794.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | MYB_related | ||||||||
Protein Properties | Length: 118aa MW: 13932.6 Da PI: 10.401 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.6 | 2.5e-12 | 36 | 79 | 4 | 47 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 W ++E+ +++++ ++ G g+Wk+I++ k+Rt+ q+ s+ qk+ PK18794.1 36 WKKDEHIRFLRGLQEVGRGRWKLISESYVKTRTPSQVASHAQKF 79 ******************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.352 | 29 | 84 | IPR017930 | Myb domain |
SMART | SM00717 | 6.7E-7 | 32 | 82 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 1.3E-12 | 36 | 82 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 7.57E-11 | 36 | 81 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.75E-6 | 36 | 80 | No hit | No description |
Pfam | PF00249 | 3.3E-9 | 36 | 78 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.9E-8 | 36 | 81 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 118 aa Download sequence Send to blast |
XYRMDRTQRD RDGGTKLFGV DIWKEEEHKP FNVKGWKKDE HIRFLRGLQE VGRGRWKLIS 60 ESYVKTRTPS QVASHAQKFI NKHYIKHGYF SLHESSVDSG GMKILTNVDK EPKKLLQE |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16911 | 3 | 8 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19000.2 | 6e-16 | MYB_related family protein |