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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK18183.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | CO-like | ||||||||
Protein Properties | Length: 469aa MW: 54049.6 Da PI: 6.1385 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 28.4 | 3.4e-09 | 16 | 59 | 3 | 40 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 +r C+ + +k++++fC ++ +lC++C + H+ H++v PK18183.2 16 ARACDSCLRKRARWFCAADDAFLCQSCDASVHSAnqlasrHERV 59 578*****************************667888888876 PP | |||||||
2 | CCT | 66.9 | 5.4e-23 | 401 | 444 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RY+eKr+tR+F KkirYe+RK +Ae+RpR+KGrFvk++ PK18183.2 401 REARVSRYREKRRTRLFAKKIRYEVRKLNAEKRPRMKGRFVKRS 444 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 2.4E-11 | 14 | 61 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 11.106 | 14 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.0E-7 | 16 | 59 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.22E-11 | 17 | 61 | No hit | No description |
PROSITE profile | PS51017 | 15.993 | 401 | 443 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.1E-17 | 401 | 443 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MISEKKTANA MAGKTARACD SCLRKRARWF CAADDAFLCQ SCDASVHSAN QLASRHERVR 60 LQTSSFKGIS KISGEVNDSS SPAWLRGFTR KARTPRSNNK GKKKDEEVLP FVPEMSGNEG 120 EDHYDDDDIP LLNYYDHQDD QQLLYQVPIF DPFAVELCNP MSTIDDQDND DDDENDHNRQ 180 NHHHHHHHLI ESTVTHHVDD HHQHDEHEVL GFLPSELELA EFAADVENLL GGGGGVEEEY 240 CCEHEINGFG VIKLLDNCKE EEEEEEEEKL NIKEENEDFF NNIKENNYNY KLDYDHNYNE 300 MEEEGKIVNY NEKKKRKREM TSDVSLSLNL NYEGVIAAWA TQGSPWTTGI RPQLNPAHGW 360 PDHHHLNYMD MWRANTGHNN SGNLMIRGGG RRSNNEVGGG REARVSRYRE KRRTRLFAKK 420 IRYEVRKLNA EKRPRMKGRF VKRSSLTFVN NPPLPITTTT TTSFPNKLK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 411 | 427 | RRTRLFAKKIRYEVRKL |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010094760.1 | 1e-124 | zinc finger protein CONSTANS-LIKE 16 | ||||
TrEMBL | A0A2P5F9N1 | 1e-149 | A0A2P5F9N1_TREOI; Zinc finger-domain containing protein | ||||
STRING | XP_010094760.1 | 1e-123 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1473 | 33 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 3e-69 | B-box type zinc finger protein with CCT domain |