PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK18158.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | NAC | ||||||||
Protein Properties | Length: 226aa MW: 26461.4 Da PI: 10.0254 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.6 | 1e-52 | 24 | 149 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 pGfrFhPtdeelv +yLk+kv++k++++ + ik++diyk++PwdLp + ++++kewyfF+kr +ky+++ r+nr+t sg+Wkatg dk++++ +++++ PK18158.1 24 LPGFRFHPTDEELVGFYLKRKVNNKPITI-DLIKSIDIYKYDPWDLPkGSSSGGDKEWYFFCKRGRKYKNSVRPNRVTGSGFWKATGIDKPIVR-NNNHI 121 69***************************.99***************446667899*************************************9.9999* PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 glkktLv+y+g+a kg+ktdW+mhe+rl PK18158.1 122 GLKKTLVYYRGSAGKGTKTDWMMHEFRL 149 **************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 54.885 | 23 | 179 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.28E-58 | 23 | 179 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-27 | 25 | 149 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005992 | Biological Process | trehalose biosynthetic process | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006561 | Biological Process | proline biosynthetic process | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0010120 | Biological Process | camalexin biosynthetic process | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
IYNMGSNNNN NHIKDHDDHD DDVLPGFRFH PTDEELVGFY LKRKVNNKPI TIDLIKSIDI 60 YKYDPWDLPK GSSSGGDKEW YFFCKRGRKY KNSVRPNRVT GSGFWKATGI DKPIVRNNNH 120 IGLKKTLVYY RGSAGKGTKT DWMMHEFRLP HNSNNNTTTT TDPQLLEAEI WTLCRIFKRN 180 VSYRKYTSDW RELSSKVRTT THQQPLMDSK NNAMMINNNN NNNNYX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 6e-53 | 25 | 185 | 22 | 174 | NAC domain-containing protein 19 |
3swm_B | 6e-53 | 25 | 185 | 22 | 174 | NAC domain-containing protein 19 |
3swm_C | 6e-53 | 25 | 185 | 22 | 174 | NAC domain-containing protein 19 |
3swm_D | 6e-53 | 25 | 185 | 22 | 174 | NAC domain-containing protein 19 |
3swp_A | 6e-53 | 25 | 185 | 22 | 174 | NAC domain-containing protein 19 |
3swp_B | 6e-53 | 25 | 185 | 22 | 174 | NAC domain-containing protein 19 |
3swp_C | 6e-53 | 25 | 185 | 22 | 174 | NAC domain-containing protein 19 |
3swp_D | 6e-53 | 25 | 185 | 22 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00310 | DAP | Transfer from AT2G43000 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015882119.1 | 1e-101 | transcription factor JUNGBRUNNEN 1 | ||||
Swissprot | Q9SK55 | 2e-85 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A2P5DV65 | 1e-106 | A0A2P5DV65_PARAD; NAC domain containing protein | ||||
STRING | XP_002513398.1 | 3e-98 | (Ricinus communis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1013 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 8e-81 | NAC domain containing protein 42 |