PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK18132.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family B3
Protein Properties Length: 325aa    MW: 37741 Da    PI: 9.6449
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK18132.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.12.8e-1730120299
                EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                fk+ +   +l+ ++l++p+kf++++   k+ s  + ++ + g +W++kl  + k g+++l+kGW eF+k   +k g +++Fk++g sef  +v ++++
  PK18132.1  30 FKIILE-ETLQANMLRIPRKFIRKYW--KTLSESVLVRLPCGSKWNMKL--KEKEGSIWLEKGWPEFAKHYSIKRGSMLIFKYVGYSEF--YVVICDT 120
                555544.4555667***********5..3467789999***********..**********************************9999..9999997 PP
2B350.83e-16216314199
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-...TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvlt...kGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                ffk+ +++++ k   + +p kfa ++ ++  ++ + +l  ++g+ W+v+l+ +  + +y ++    GW +Fv++n++++gD+++F+l + +e  + v+++
  PK18132.1 216 FFKAVMQPSYVKAEFFNVPQKFAYRYLKD--QG-DAVLCVPNGKNWSVQLRTSILRHEYSISrlcCGWHKFVNDNKIEVGDVCIFELLDGTEIAFQVHIV 312
                788888888888888********999544..33.7999************8855555555554449********************88667766889888 PP

                -S CS
         B3  98 rk 99 
                r+
  PK18132.1 313 RR 314
                86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.9E-2322120IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-2322120IPR015300DNA-binding pseudobarrel domain
CDDcd100179.00E-1727119No hitNo description
PROSITE profilePS5086313.35228121IPR003340B3 DNA binding domain
SMARTSM010199.2E-1529121IPR003340B3 DNA binding domain
PfamPF023621.1E-1436120IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.104.0E-23209314IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-20210314IPR015300DNA-binding pseudobarrel domain
CDDcd100171.33E-17215313No hitNo description
PROSITE profilePS5086313.07216315IPR003340B3 DNA binding domain
PfamPF023621.7E-14216314IPR003340B3 DNA binding domain
SMARTSM010192.0E-9217315IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
XTQRPSYGGR GPMGDSSQQQ LFSSRTPHFF KIILEETLQA NMLRIPRKFI RKYWKTLSES  60
VLVRLPCGSK WNMKLKEKEG SIWLEKGWPE FAKHYSIKRG SMLIFKYVGY SEFYVVICDT  120
STAEIDYPYD NIDLQFQVPK KEAVKDDCVE ISYHFSPSSG AKTREKSSYL PCSRPQNKRI  180
RTTSPTAFKG RNSPYISLAE KNIILARVSF ESERPFFKAV MQPSYVKAEF FNVPQKFAYR  240
YLKDQGDAVL CVPNGKNWSV QLRTSILRHE YSISRLCCGW HKFVNDNKIE VGDVCIFELL  300
DGTEIAFQVH IVRRVVCEGL QWCKX
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5BZ411e-102A0A2P5BZ41_PARAD; B3 DNA binding domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.19e-32B3 family protein