PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

PK17885.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

GRF

Protein Properties

Length: 163aa MW: 18590.9 Da PI: 9.8738

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK17885.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.5	1.3e-24	71	114	2	45
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 +ep+rCrRtDGKkWRCs+++l+ +k+CErH+hrgr+rsrk +e+ PK17885.1 71 NEPWRCRRTDGKKWRCSKEALPHQKYCERHIHRGRHRSRKLVES 114 79***************************************987 PP
2	QLQ	38	5.2e-14	8	41	3	36
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36 FT Ql++L Q+l+yKy+ a++ vP +L+q+i+ PK17885.1 8 FTILQLHELQLQALIYKYIEAGLAVPYHLVQPIW 41 7778*****************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.6E-4	6	42	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	18.636	7	42	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	5.1E-11	8	41	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	25.525	70	114	IPR014977	WRC domain
Pfam	PF08879	1.7E-20	72	113	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 163 aa Download sequence Send to blast
XSSSYHGFTI LQLHELQLQA LIYKYIEAGL AVPYHLVQPI WQSFSSTGLN NNGLGIVGPI 60 LCLDPRKGME NEPWRCRRTD GKKWRCSKEA LPHQKYCERH IHRGRHRSRK LVESSYTNSK 120 KTTMATATTT STTMTDLSIS LHVNENNATR STILFPSIDF QPN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024029096.1	2e-49	growth-regulating factor 10
Swissprot	Q6AWX7	4e-37	GRF12_ORYSJ; Growth-regulating factor 12
TrEMBL	A0A2P5CSQ9	5e-68	A0A2P5CSQ9_TREOI; Growth-regulating factor
STRING	POPTR_0001s08310.1	2e-46	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14195	10	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	1e-31	growth-regulating factor 2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]