PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK17638.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WRKY
Protein Properties Length: 592aa    MW: 65445.1 Da    PI: 7.057
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK17638.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.2e-30239298159
                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+a+d +++++tYeg+Hnh+
  PK17638.1 239 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCADDMSILITTYEGSHNHP 298
                58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-31224300IPR003657WRKY domain
SuperFamilySSF1182902.62E-27232300IPR003657WRKY domain
PROSITE profilePS5081128.506234300IPR003657WRKY domain
SMARTSM007749.5E-37239299IPR003657WRKY domain
PfamPF031067.1E-27240298IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MPNSYASSHD QHLQTNNLLS TKKDCEIENT KAEMGEVREE NKRLKTVLNH MEKDYKSLQL  60
RFFDIVKEVD HHDHDHDQDL KKPITIITNC DDEIEEADQL VSLRLGRSPK NITKTNLMIR  120
KSRDDEDQDQ DHQEELIKAN LTLGLGSNND NDQLKQLSSE IVINEATPDN SSELLLEANN  180
NNKIPNSINN NNNNNNNNKM IKSSTCTSSS NNDQDEVVSQ AQVKRARVSV RARCDTPTMN  240
DGCQWRKYGQ KIAKGNPCPR AYYRCTVAPS CPVRKQVQRC ADDMSILITT YEGSHNHPLP  300
VTATAMASTT SAAASMLLSG SSTSSSNHHD HPFFTPNKNS SPLNMINGLV QNNNNFNYFD  360
HTLRTKQFYS STSLSPLFPT ITLDLTTPQL TSSTTSAFAP SSNSRSSSLH SFGPTSEPKQ  420
PPLWGNNVGY LNYGPMYYDK AHQTNNGPLN LGGNKQAQEF IYQRCAEKIV SYNNNNHNQG  480
SSAHETLTET LTKAITSDPS TFKSVIAAAI SSMVGGGETH LGRKQDGVEK LSQRLTLGDV  540
STNTNTNITT TTATTANTNN NTSKAVSHNP LTLQNGQGLS SSYFNRLSSS NF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A6e-21226300174WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4713358e-39AM471335.2 Vitis vinifera contig VV78X018825.12, whole genome shotgun sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102869.11e-153probable WRKY transcription factor 72
TrEMBLA0A2P5AFU50.0A0A2P5AFU5_PARAD; WRKY domain containing protein
STRINGXP_010102869.11e-152(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.11e-74WRKY DNA-binding protein 72