PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK17217.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | LBD | ||||||||
Protein Properties | Length: 134aa MW: 15033.2 Da PI: 8.5085 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 137 | 6.6e-43 | 33 | 132 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael+++++e PK17217.2 33 PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPENQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRAE 132 7***********************************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.841 | 32 | 133 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.3E-43 | 33 | 130 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 134 aa Download sequence Send to blast |
QDPIFNHHHQ QQQQQMGRRH MLGPPGTLNT ITPCAACKLL RRRCAQECPF SPYFSPHEPH 60 KFASVHKVFG ASNVSKMLME VPENQRADAA NSLVYEANVR LRDPVYGCMG AISALQQQVQ 120 SLQAELNAVR AEIL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-45 | 25 | 134 | 3 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-45 | 25 | 134 | 3 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021617781.1 | 7e-84 | LOB domain-containing protein 15 | ||||
Refseq | XP_022746093.1 | 9e-84 | LOB domain-containing protein 15-like | ||||
Refseq | XP_023925198.1 | 9e-84 | LOB domain-containing protein 15 | ||||
Swissprot | Q8L5T5 | 5e-70 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
Swissprot | Q9AT61 | 2e-69 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A2P5AHJ8 | 3e-83 | A0A2P5AHJ8_TREOI; Wilm's tumor protein | ||||
STRING | cassava4.1_031813m | 3e-83 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 8e-70 | LOB domain-containing protein 15 |
Publications ? help Back to Top | |||
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