PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

PK17217.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

LBD

Protein Properties

Length: 298aa MW: 32546.8 Da PI: 8.3099

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK17217.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.1	5.3e-42	71	170	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe++r da++slvyeA++r+rdPvyG++g i++lqqq+++l+ael+++++e PK17217.1 71 PCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPENQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQSLQAELNAVRAE 170 7***********************************************************************************************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.841	70	171	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.9E-42	71	168	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 298 aa Download sequence Send to blast
KRSACELECP EKXERFDEIG KKIKREYSAS SSSSTSTDAG GGHNHHHQQQ QQQMGRRHML 60 GPPGTLNTIT PCAACKLLRR RCAQECPFSP YFSPHEPHKF ASVHKVFGAS NVSKMLMEVP 120 ENQRADAANS LVYEANVRLR DPVYGCMGAI SALQQQVQSL QAELNAVRAE ILRNKYRDHQ 180 PNNNNNNHNN NNNNITPNST TSSSSLHHHL QQHLALLSSS SSNNNSHGAA VSVAALPPVG 240 AIPQPPPQQP PPLSQISTVQ SLPIATTTTS SSSSMYTQIT TADQDYNTIS SENVPFFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-44	63	173	3	113	LOB family transfactor Ramosa2.1
5ly0_B	4e-44	63	173	3	113	LOB family transfactor Ramosa2.1
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Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024018199.1	1e-102	LOW QUALITY PROTEIN: LOB domain-containing protein 15
Swissprot	Q8L5T5	1e-75	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A2P5AHJ8	1e-108	A0A2P5AHJ8_TREOI; Wilm's tumor protein
STRING	XP_004307714.1	2e-98	(Fragaria vesca)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2298	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	6e-70	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]