PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK17141.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NAC
Protein Properties Length: 376aa    MW: 42152.9 Da    PI: 4.9267
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK17141.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.71.7e-30551961128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra........tksgyWka 85 
                lp+G++F+P+de+l+ ++L  k+   +      ++++   ++  +iy  +P++Lp  +k++ ++++fF+k  ++y+tg+rk+r+        +++ +W++
  PK17141.1  55 LPAGVKFEPSDEDLI-YHLSGKCGVGNiiphvfIDEFIPtLEGEGIYCDHPENLP-GAKKDGRSIHFFHKICNAYSTGQRKRRKvqcqqgstAEHVRWHK 152
                799************.9******9999887655333333366778**********.55678899*******************86888887666899*** PP

        NAM  86 tgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                tgk+k+v++ +g ++g kk++v+y  +++ +k+ +t+W+mh+y+l
  PK17141.1 153 TGKTKPVIE-NGVQKGWKKIMVLYksTKKGSKPDRTNWTMHQYHL 196
                *********.999***********4434667778*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-3541215IPR003441NAC domain
PROSITE profilePS5100530.41755215IPR003441NAC domain
PfamPF023651.6E-1256196IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MERSWLINSR GIAKKVKSAS RSSAYQIKDC GANRECPNCH YDIDNSDVSS EWPGLPAGVK  60
FEPSDEDLIY HLSGKCGVGN IIPHVFIDEF IPTLEGEGIY CDHPENLPGA KKDGRSIHFF  120
HKICNAYSTG QRKRRKVQCQ QGSTAEHVRW HKTGKTKPVI ENGVQKGWKK IMVLYKSTKK  180
GSKPDRTNWT MHQYHLGTGE EENEGDYVVS KIFYKQSENS DNITLIEESD MKAAAAHEAS  240
PKTPNSNPPI PPRHDMTDTT TPLQSSAKEE GDHIEMSPLI PQTDGQGENN MEEFPWLAGE  300
SQAAETYDLL NIDDSLLCKE TFDCIPNTNT NLTGKNIPPC GISDLENLDF DSPPDFQLSD  360
LQFCSQESSV LDWLDW
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028963541.11e-161SUPPRESSOR OF GAMMA RESPONSE 1-like isoform X1
TrEMBLA0A2P5BFR00.0A0A2P5BFR0_TREOI; NAC domain containing protein
STRINGXP_008230522.11e-159(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75723047
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01600.17e-90NAC domain containing protein 44