PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK16897.4
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WRKY
Protein Properties Length: 417aa    MW: 46433.9 Da    PI: 6.5085
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK16897.4genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY108.24e-34232289259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                +Dgy+WrKYGqK vk+s+fprsYYrCtsa+C+vkk+vers +dp+vv++tYeg+H+h+
  PK16897.4 232 EDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSFTDPSVVVTTYEGQHTHP 289
                8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.9E-35216291IPR003657WRKY domain
SuperFamilySSF1182903.27E-29223291IPR003657WRKY domain
PROSITE profilePS5081132.156226291IPR003657WRKY domain
SMARTSM007741.3E-40231290IPR003657WRKY domain
PfamPF031061.2E-26232289IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MEMKRKMMMT KDSSNMMMMM QGSSNNSSSL SDIISSNGSN YFPMFESATA DQFFGGENNK  60
GSNLGFMELL GVHDYFTTTN IPPAPSPFFD FPALLASTNT VPTSTTTNIT STDHDPFIAI  120
PKKEVVINSD ACLNSTSNIN NNINNQPATP NTSSISSASS TDALNEEQTN NNKAADPEYQ  180
EEEEEDDDEE EGEDQPPKTT TNKQLKAKKT NQKKQREPRF AFMTKSEVDH LEDGYRWRKY  240
GQKAVKNSPF PRSYYRCTSA SCNVKKRVER SFTDPSVVVT TYEGQHTHPS PLISRPTHHH  300
HTTAAVPPVA AAAFTNMPFQ FRHHGQLPQQ YHFMTDHHHL LSSSSLSLPS NHNNNNNNNN  360
NNSNSFANNN NNNGITTNSS AVAFLHERRF CNPSPAPALI TDHGLLQDIV PSNMRTN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-262242911077Probable WRKY transcription factor 4
2lex_A1e-262242911077Probable WRKY transcription factor 4
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00069PBMTransfer from AT2G47260Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5B8693e-93A0A2P5B869_TREOI; WRKY domain containing protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100234114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47260.13e-46WRKY DNA-binding protein 23