PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK16787.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 345aa    MW: 38745.7 Da    PI: 4.9823
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK16787.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.93e-19126176155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                ++++GVr+++ +g+W+AeIrdp     r  r +lg+++taeeAa  +++a+ +l+g
  PK16787.1 126 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 176
                59********.**********72....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.45E-32126183No hitNo description
SuperFamilySSF541711.5E-21127184IPR016177DNA-binding domain
PfamPF008472.1E-12127176IPR001471AP2/ERF domain
SMARTSM003809.8E-37127191IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.9E-30127184IPR001471AP2/ERF domain
PROSITE profilePS5103223.657127184IPR001471AP2/ERF domain
PRINTSPR003673.7E-10128139IPR001471AP2/ERF domain
PRINTSPR003673.7E-10150166IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MNRGGSVIKF TEHKNHTKLT TQEKSITKTS PEMVIKRPRI VRVSVTDGNA TDSSSDEEEY  60
FNNNNNRRQR VKKFVNEITI ESCSTDETSA VWKSRSSRNS RNKRTRVPAV NPRSMKAETT  120
SSVAAKKFRG VRQRPWGKWA AEIRDPLRRV RLWLGTYDTA EEAAMVYDNA AIQLRGPDAL  180
TNFSTVPPVP KNVVTENIIK PAVSSGYYSG EESNNNNLCS PTSVLRCPSP SIEEEAESSS  240
PPSKESRDIG EMREDSCVSE NFSEFSEHSS YGSFIPDDIF DFHSSIPDFF DETSLRDGIL  300
GNDDFSGIFT ETCWDFGLSS NKSYPMDDYF QDIGDIFSSD PLVAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-20126183159ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009336252.11e-127PREDICTED: ethylene-responsive transcription factor CRF2-like
TrEMBLA0A2P5EAD01e-159A0A2P5EAD0_TREOI; AP2/ERF transcription factor
STRINGXP_009336252.11e-127(Pyrus x bretschneideri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.26e-52cytokinin response factor 2