PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PK16724.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 243aa MW: 27074.9 Da PI: 10.0966 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.4 | 5.2e-38 | 22 | 195 | 2 | 134 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................................... 65 g+kdrhsk+ T++g+RdRRvRls+++a+ f+dLqd+LGfd++sk++eWL+++a +ai el+++ PK16724.1 22 SGGKDRHSKVWTSKGLRDRRVRLSVTTAIHFYDLQDRLGFDQPSKAVEWLINAASEAIAELPSLngsfpdtpkqlsdekrgsvgtntgggeqgfdsaeve 121 689******************************************************************9999999999999999999999855544443 PP TCP 66 ....ssssasec...eaesssssasnsssgkaaksaakskksqksaasalnlak....esrakarararertrekmrikn 134 + ++ + ++++n+++++ +++a+s+ s++s+ s l+l++ r kar+rarer ++++ ++n PK16724.1 122 mdgiN------YhhhQHLQLDQQNQNQNQNQPLSKSACSSTSETSKGSGLSLSRsdirVNRVKARERARERAAKEKEKEN 195 33221......022345555555556666666777777777777777778887754446669********7777666654 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.8E-44 | 23 | 193 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.842 | 24 | 82 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.946 | 173 | 191 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009637 | Biological Process | response to blue light | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic | ||||
GO:1903508 | Biological Process | positive regulation of nucleic acid-templated transcription | ||||
GO:2000306 | Biological Process | positive regulation of photomorphogenesis |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 243 aa Download sequence Send to blast |
XGANRLRGWH HSSRIIRVSR ASGGKDRHSK VWTSKGLRDR RVRLSVTTAI HFYDLQDRLG 60 FDQPSKAVEW LINAASEAIA ELPSLNGSFP DTPKQLSDEK RGSVGTNTGG GEQGFDSAEV 120 EMDGINYHHH QHLQLDQQNQ NQNQNQPLSK SACSSTSETS KGSGLSLSRS DIRVNRVKAR 180 ERARERAAKE KEKENESRIV VHHNDNNNNN NNNLNSISQN STFTELLTAG MSNNSNNNNN 240 NNX |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-23 | 29 | 83 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 3e-23 | 29 | 83 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). Participates in ovule develpment (PubMed:25378179). Promotes light-regulated transcription of CHS, CAB, HYH and HY5. Regulates positively photomorphogenesis (e.g. hypocotyl elongation inhibition and cotyledon opening in response to blue light) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179, ECO:0000269|PubMed:26596765}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00063 | PBM | Transfer from AT4G18390 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW (PubMed:12931144). Induced by blue light. Stabilized by light but labile in darkness due to proteasome-dependent proteolysis (at protein level) (PubMed:26596765). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:26596765}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_001306852.1 | 1e-106 | transcription factor TCP2-like | ||||
Refseq | XP_012072140.1 | 1e-106 | transcription factor TCP2-like isoform X1 | ||||
Refseq | XP_012072141.1 | 1e-106 | transcription factor TCP2-like isoform X1 | ||||
Refseq | XP_012072142.1 | 1e-106 | transcription factor TCP2-like isoform X1 | ||||
Refseq | XP_012072143.1 | 1e-106 | transcription factor TCP2-like isoform X1 | ||||
Refseq | XP_020534893.1 | 1e-106 | transcription factor TCP2-like isoform X1 | ||||
Swissprot | Q93V43 | 4e-53 | TCP2_ARATH; Transcription factor TCP2 | ||||
TrEMBL | A0A067L0H7 | 1e-104 | A0A067L0H7_JATCU; TCP transcription factor BRC1 | ||||
STRING | POPTR_0004s06440.1 | 1e-103 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4019 | 31 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G18390.2 | 4e-43 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 |
Publications ? help Back to Top | |||
---|---|---|---|
|