PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK16652.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family AP2
Protein Properties Length: 180aa    MW: 19816.7 Da    PI: 10.3151
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK16652.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.61.3e-17122171155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  PK16652.1 122 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 171
                78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.68E-16122179IPR016177DNA-binding domain
PfamPF008471.2E-9122171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.9E-17123179IPR001471AP2/ERF domain
SMARTSM003806.5E-26123180IPR001471AP2/ERF domain
PROSITE profilePS5103217.794123179IPR001471AP2/ERF domain
CDDcd000187.99E-12123180No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
XVFREEDSSI NVTNTTSSTF FFDIMKREKD CNNGATAGKE TNNISPPGFL TRSFFPVAGE  60
KVGNQFVEAG SGSSSSRPQW LNLSFADSGG GGAAVQPPAD VKVLQQKQQI KKSRRGPRSR  120
SSQYRGVTFY RRTGRWESHI WDCGKQVYLG GFDTAHAAAR AYDRAAIKFR GVDADINFNV
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007220866.17e-60AP2-like ethylene-responsive transcription factor TOE3
RefseqXP_021819127.15e-61ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotQ9LVG23e-34TOE2_ARATH; AP2-like ethylene-responsive transcription factor TOE2
TrEMBLA0A314ZFD38e-60A0A314ZFD3_PRUYE; AP2-like ethylene-responsive transcription factor TOE3
STRINGEMJ220653e-59(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.24e-30related to AP2.7