PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

PK16587.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

TALE

Protein Properties

Length: 388aa MW: 43899 Da PI: 6.6502

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK16587.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.6	2.5e-09	314	348	21	55
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 k +yps++++ LA+++gL+++q+ +WF N+R ++ PK16587.1 314 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 348 569*****************************885 PP
2	ELK	41	4e-14	268	289	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK qLlrKYsgyLgsLkqEF+ PK16587.1 268 ELKGQLLRKYSGYLGSLKQEFM 289 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01255	1.0E-20	129	173	IPR005540	KNOX1
Pfam	PF03790	1.2E-21	132	169	IPR005540	KNOX1
SMART	SM01256	2.1E-25	180	231	IPR005541	KNOX2
Pfam	PF03791	4.0E-20	184	229	IPR005541	KNOX2
SMART	SM01188	2.8E-8	268	289	IPR005539	ELK domain
PROSITE profile	PS51213	11.174	268	288	IPR005539	ELK domain
Pfam	PF03789	6.5E-11	268	289	IPR005539	ELK domain
PROSITE profile	PS50071	12.989	288	351	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.63E-19	290	366	IPR009057	Homeodomain-like
SMART	SM00389	7.4E-13	290	355	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	4.0E-28	293	353	IPR009057	Homeodomain-like
CDD	cd00086	3.81E-12	300	352	No hit	No description
Pfam	PF05920	7.2E-17	308	347	IPR008422	Homeobox KN domain
PROSITE pattern	PS00027	0	326	349	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009934	Biological Process	regulation of meristem structural organization
GO:0048440	Biological Process	carpel development
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 388 aa Download sequence Send to blast
MEGGSNGTSC MMGYGENSNG ICPMMMMMPI MTSHHGQHHH NHPNNNPNAN TNNTPIFLPL 60 PSLNNQDHRN RISNSSGSSS FMVEDSHQNN NNNNNNTNNI PTPGCYFMAD HNTNTITNNN 120 NNDSINNISS FKAKIMAHPH YPRLLAAYVN CQKVGAPVEV VGRLEEACSS AAAMGQMSSS 180 TGCLGEDPAL DQFMEAYCEM LTKYEQELSK PFKEAMLFLQ RVECQFKALS LSTDSGCRDG 240 NVDQNNGSSE EEIDVNNNFI DPQAEDRELK GQLLRKYSGY LGSLKQEFMK KRKKGKLPKE 300 ARQQLLDWWS RHYKWPYPSE SQKLALAEST GLDQKQINNW FINQRKRHWK PSEDMQFVVM 360 DAAHPHHFYM DNVLANNHFP MDISPSLL

Sequence ? help Back to Top

Protein Sequence Length: 388 aa Download sequence Send to blast

MEGGSNGTSC MMGYGENSNG ICPMMMMMPI MTSHHGQHHH NHPNNNPNAN TNNTPIFLPL  60
PSLNNQDHRN RISNSSGSSS FMVEDSHQNN NNNNNNTNNI PTPGCYFMAD HNTNTITNNN  120
NNDSINNISS FKAKIMAHPH YPRLLAAYVN CQKVGAPVEV VGRLEEACSS AAAMGQMSSS  180
TGCLGEDPAL DQFMEAYCEM LTKYEQELSK PFKEAMLFLQ RVECQFKALS LSTDSGCRDG  240
NVDQNNGSSE EEIDVNNNFI DPQAEDRELK GQLLRKYSGY LGSLKQEFMK KRKKGKLPKE  300
ARQQLLDWWS RHYKWPYPSE SQKLALAEST GLDQKQINNW FINQRKRHWK PSEDMQFVVM  360
DAAHPHHFYM DNVLANNHFP MDISPSLL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	283	292	LKQEFMKKRK
2	289	293	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Possible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018844242.1	1e-178	PREDICTED: homeobox protein SBH1-like
Swissprot	P46608	1e-146	HSBH1_SOYBN; Homeobox protein SBH1
TrEMBL	Q5XLC9	1e-177	Q5XLC9_POPCN; Homeodomain protein ARBORKNOX1
STRING	EOY28807	1e-175	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2039	34	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62360.1	1e-137	KNOX/ELK homeobox transcription factor

Publications ? help Back to Top
Shu Y, et al. GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean. Plant Cell Rep., 2015. 34(11): p. 1927-37 [PMID:26205508]