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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
PK16276.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family |
C2H2 |
Protein Properties |
Length: 150aa MW: 16651.4 Da PI: 7.371 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
PK16276.1 | genome | CCBR | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 11.3 | 0.001 | 63 | 86 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23
y C +Cg + s k + ++Hi t H
PK16276.1 63 YFCDYCGICRSKKALITSHILTdH 86
78******************9988 PP
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2 | zf-C2H2 | 21.7 | 5.2e-07 | 110 | 131 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23
+C++Cg +F+ +Lk+H+ +H
PK16276.1 110 TCEKCGLTFKKAAYLKQHMLSH 131
6*******************99 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 150 aa
Download sequence Send
to blast |
XSSLSSIVFT LTSGPFSIFV LLSVDSLSSI GANSSSLTLS RFYQSEMDEA KEDKPIFRDI 60 RRYFCDYCGI CRSKKALITS HILTDHKDEL DKVRAGGDNS TEGLKESKNT CEKCGLTFKK 120 AAYLKQHMLS HSTEIRISVN CLLSLDDGVX
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Functional Description ? help
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Source |
Description |
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |