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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK16254.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | GRF | ||||||||
Protein Properties | Length: 429aa MW: 46913 Da PI: 8.7308 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 81.8 | 5.9e-26 | 154 | 197 | 1 | 44 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 d+epgrCrRtDGKkWRCsr+v+ g+k+CErH+hrgr+rsrk++e PK16254.1 154 DPEPGRCRRTDGKKWRCSRDVVVGQKYCERHMHRGRNRSRKPVE 197 79***************************************987 PP | |||||||
2 | QLQ | 49.8 | 1e-17 | 78 | 114 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 s+F+ aQ+q+L+ Q+l+++y++a++ vP+eLlq+i+k PK16254.1 78 SYFSLAQWQELELQALIFRYMLAGATVPSELLQHIKK 114 79*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 6.3E-10 | 78 | 114 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 18.957 | 79 | 114 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 2.9E-12 | 79 | 112 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.87 | 154 | 198 | IPR014977 | WRC domain |
Pfam | PF08879 | 4.4E-22 | 155 | 197 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 429 aa Download sequence Send to blast |
MEKQQHESEH HQQHSAKIPK LVIETHHMKQ DLSSTCSEPL PLFVPEPPNI TKMITTGTLS 60 TDSTTSPTTR IPRGGMGSYF SLAQWQELEL QALIFRYMLA GATVPSELLQ HIKKSFNLLN 120 TTPYFLHHSL QPYPHFQPSP TLLQSGYWGK ASMDPEPGRC RRTDGKKWRC SRDVVVGQKY 180 CERHMHRGRN RSRKPVEIPT PTTTTTGGGR LAGDGVGRGT LASNNGPSPL STSSNAAHFS 240 LSMPTSSIDL LHLNNRSNAS DVKNENKDLF KPHNEVSGDG KSDGHILRHF FDDWPRSLQE 300 SGNVEINNNN NNNNNNNNNR MRTSPMSSAS SLSISITGNN SSSTSDISLK LSTGGNGEEM 360 GHPEAHSDRQ QQSQLGWASS GWASNPMASM GGPLAEALRS SNSNSSSPTS VLHQLPPRSS 420 ASDTCIVST |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015901955.1 | 1e-151 | growth-regulating factor 3 isoform X1 | ||||
Refseq | XP_015901956.1 | 1e-151 | growth-regulating factor 3 isoform X1 | ||||
TrEMBL | A0A2P5C4P5 | 1e-172 | A0A2P5C4P5_TREOI; Growth-regulating factor | ||||
STRING | XP_010089399.1 | 1e-140 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7895 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G52910.1 | 2e-56 | growth-regulating factor 4 |