PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | PK16227.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 455aa MW: 50865.3 Da PI: 5.8451 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 103.8 | 1.1e-32 | 228 | 282 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k r+rWt+eLHe+Fveav+ LGG+e+AtPk il+lmkv+gLt++hvkSHLQkYR+ PK16227.1 228 KSRMRWTQELHEAFVEAVNTLGGNERATPKGILNLMKVPGLTIYHVKSHLQKYRT 282 68****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.838 | 225 | 285 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-30 | 226 | 284 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 5.2E-18 | 226 | 282 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-24 | 228 | 282 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.4E-9 | 230 | 281 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.3E-17 | 313 | 359 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 455 aa Download sequence Send to blast |
MSLSFPVGST PIEDKYTKLP DTYQVSSQRK IMMNSSIRQG PSLSSSAGSN ERFFSSPSRL 60 PSDVQDPISS VSPHERHSLH SLVPQSSGGM PPIHSPLSEG QSTTFIDHIT ENNDIAWCPN 120 SIHDLLDFPG MVSVPNDQVE SSTVAARSQD HNQKNDWPDW QMISISDDLD QLWPDLPISR 180 NRTDSKPEVC IQSVDASVQQ IQNYQQPSLQ CGEHATTPDP LCNASSTKSR MRWTQELHEA 240 FVEAVNTLGG NERATPKGIL NLMKVPGLTI YHVKSHLQKY RTARYKPELS EGITGKKSPT 300 AEDVRSQELN TSMGITEALR LQVELQKRLH EQLEHQRKLQ LQIEEQGKYP EKMFDQHKKM 360 ETKYKASSST SHDNKNSLSN TAPHSSENNK SKISEVDLLE KGISSSNAKS NPDVSFIDPS 420 EKEKAYDETE TCKENSDVPP TKRDDVNEWN SSGIA |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-29 | 228 | 286 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-29 | 228 | 286 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-29 | 228 | 286 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-29 | 228 | 286 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-29 | 228 | 286 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-29 | 228 | 286 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-29 | 228 | 286 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-29 | 228 | 286 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010102208.1 | 1e-180 | protein PHR1-LIKE 1 isoform X2 | ||||
TrEMBL | A0A2P5A6T3 | 0.0 | A0A2P5A6T3_TREOI; Octamer-binding transcription factor | ||||
STRING | XP_010102208.1 | 1e-180 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1512 | 34 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G29000.2 | 7e-75 | G2-like family protein |