PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK16035.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | WRKY | ||||||||
Protein Properties | Length: 90aa MW: 10239 Da PI: 10.1567 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.9 | 3.1e-31 | 2 | 55 | 5 | 59 |
S-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 5 ynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ d++++ei+Y+++Hnh PK16035.2 2 YNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSH-DGQITEIIYKSNHNHA 55 9*************************************.***************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.389 | 1 | 57 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.9E-26 | 2 | 57 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.22E-23 | 2 | 57 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.0E-23 | 2 | 54 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.3E-29 | 2 | 56 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 90 aa Download sequence Send to blast |
XYNWRKYGQK QVKGSEYPRS YYKCTHPNCQ VKKKVERSHD GQITEIIYKS NHNHAKPQPN 60 RRAGVGSSAA ALFFDEMLEL SGGTGISVKX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-18 | 2 | 57 | 18 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015875770.1 | 1e-41 | WRKY transcription factor SUSIBA2-like | ||||
Swissprot | O65590 | 3e-32 | WRK34_ARATH; Probable WRKY transcription factor 34 | ||||
TrEMBL | A0A2P5C280 | 7e-41 | A0A2P5C280_TREOI; WRKY domain containing protein | ||||
TrEMBL | A0A2P5CUG5 | 8e-41 | A0A2P5CUG5_PARAD; WRKY domain containing protein | ||||
TrEMBL | A0A386IPD1 | 2e-42 | A0A386IPD1_ZIZJJ; WRKY transcription factor 64 | ||||
STRING | XP_010111075.1 | 4e-39 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF19281 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.1 | 1e-34 | WRKY family protein |
Publications ? help Back to Top | |||
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