PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK16035.2
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WRKY
Protein Properties Length: 90aa    MW: 10239 Da    PI: 10.1567
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK16035.2genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.93.1e-31255559
               S-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY  5 ynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
               ynWrKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ d++++ei+Y+++Hnh 
  PK16035.2  2 YNWRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSH-DGQITEIIYKSNHNHA 55
               9*************************************.***************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081122.389157IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.9E-26257IPR003657WRKY domain
SuperFamilySSF1182902.22E-23257IPR003657WRKY domain
PfamPF031061.0E-23254IPR003657WRKY domain
SMARTSM007742.3E-29256IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
XYNWRKYGQK QVKGSEYPRS YYKCTHPNCQ VKKKVERSHD GQITEIIYKS NHNHAKPQPN  60
RRAGVGSSAA ALFFDEMLEL SGGTGISVKX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-182571874WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015875770.11e-41WRKY transcription factor SUSIBA2-like
SwissprotO655903e-32WRK34_ARATH; Probable WRKY transcription factor 34
TrEMBLA0A2P5C2807e-41A0A2P5C280_TREOI; WRKY domain containing protein
TrEMBLA0A2P5CUG58e-41A0A2P5CUG5_PARAD; WRKY domain containing protein
TrEMBLA0A386IPD12e-42A0A386IPD1_ZIZJJ; WRKY transcription factor 64
STRINGXP_010111075.14e-39(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1928145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-34WRKY family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Hu X, et al.
    Proteasome-mediated degradation of FRIGIDA modulates flowering time in Arabidopsis during vernalization.
    Plant Cell, 2014. 26(12): p. 4763-81
    [PMID:25538183]
  3. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]