PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK16035.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WRKY
Protein Properties Length: 341aa    MW: 37772.9 Da    PI: 9.1474
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK16035.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.67.1e-301470259
               --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
               +Dgyn rKYGqK+vkgse+prsYY+Ct+++C+vkkkvers+ d++++ei+Y+++Hnh 
  PK16035.1 14 EDGYNCRKYGQKQVKGSEYPRSYYKCTHPNCQVKKKVERSH-DGQITEIIYKSNHNHA 70
               7****************************************.***************7 PP
2WRKY104.65.2e-33220277259
                --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                +Dgy+WrKYGqK+vkg+++prsYY+CtsagC v+k+ver++ d k++++tYeg+Hnh+
  PK16035.1 220 EDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCIVRKHVERASGDLKAIITTYEGKHNHD 277
                8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.6E-251172IPR003657WRKY domain
SuperFamilySSF1182903.53E-221172IPR003657WRKY domain
SMARTSM007741.5E-311371IPR003657WRKY domain
PROSITE profilePS5081120.7821472IPR003657WRKY domain
PfamPF031067.2E-221469IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-34204279IPR003657WRKY domain
SuperFamilySSF1182906.15E-28214279IPR003657WRKY domain
PROSITE profilePS5081137.413214279IPR003657WRKY domain
SMARTSM007741.1E-36219278IPR003657WRKY domain
PfamPF031064.9E-25220277IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MKKLNCSVGP RTSEDGYNCR KYGQKQVKGS EYPRSYYKCT HPNCQVKKKV ERSHDGQITE  60
IIYKSNHNHA KPQPNRRAGV GSSAAALFFD EMLELSGGTG ISVKVEGGSS LDRKNNHHDG  120
TNEITGTPNE LSNGPLSSMH GKSIELGENT PEVSTTVSSS HDDEKGNMLL RGDGLDDEEP  180
EAKRRKKLNC SSIETTALPS RAVREPKIVI QIETAADILE DGYRWRKYGQ KVVKGNPNPR  240
SYYKCTSAGC IVRKHVERAS GDLKAIITTY EGKHNHDVPA ARNSNNHINS AGPNNPQPIT  300
QTPINSHPRN TNIPKAETQI HGLTPLFDRK PEFCNNDFLR X
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-3414280878Probable WRKY transcription factor 4
2lex_A5e-3414280878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010111075.11e-134WRKY transcription factor SUSIBA2
SwissprotQ6B6R42e-85WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2P5C2801e-135A0A2P5C280_TREOI; WRKY domain containing protein
STRINGXP_010111075.11e-134(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83493445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.12e-84WRKY DNA-binding protein 34
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]