PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK15838.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family C3H
Protein Properties Length: 705aa    MW: 76743.1 Da    PI: 5.7986
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK15838.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.71.5e-06277297526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C+ f++ G C+ Gd C +aHg
  PK15838.1 277 PCPEFRK-GSCRQGDACEYAHG 297
                8******.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.21E-1173153IPR020683Ankyrin repeat-containing domain
PfamPF127961.0E-773142IPR020683Ankyrin repeat-containing domain
SMARTSM002480.003975105IPR002110Ankyrin repeat
PROSITE profilePS5029713.07175150IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.205.3E-1476150IPR020683Ankyrin repeat-containing domain
CDDcd002043.94E-577150No hitNo description
SMARTSM002480.79110142IPR002110Ankyrin repeat
SMARTSM003561.0E-4272298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.662277299IPR000571Zinc finger, CCCH-type
SMARTSM0035650307330IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.305307331IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MCSGSKRKPA NAGLVMEGES EKQEGLRYNF SVLLELSASD DLDGFKSAVE DEARDIDEAS  60
LWYGRRIGSK RMAFEERTPL MIAAMFGSKR VLKFILETGC VDVNRACGSD KATALHCAAA  120
GAAACSAEVA KLLLAASADA NSLDANGNRP GDLLVPVRSS LAFDLRKKAL EVILKGVEET  180
SGFPDQVVDE LEDQERQEFF SLRSSKDGLE KKEYPVDLSL PDIKNGIYST DDFRMYTFKI  240
KPCSRAYSHD WTECPFVHPG ENARRRDPRK YHYSCVPCPE FRKGSCRQGD ACEYAHGIFE  300
CWLHPAQYRT RLCKDETGCQ RRVCFFAHKH EELRPLYAST GSAVPSPRSF AGSSLDMGSI  360
SPLALGSPSV LIPPSTPPMT PSGASSPMSG NMWQNQSNIA PPTLHLPGSR LKSAMSARDM  420
DLDVDIIGME SHRRRQQQMM DEISCISSPS NWNNGLSPAS PFATQGDRTD ELSRVGGVKP  480
TNLDDIFGSF DSSILPQLQG LSVDTASSHL QSPTGMHMRQ NMNQQMPSNY SVSLSSSPGR  540
TSPMYGVGAS SGAAAVMNSR AAAFAKRSQS FIERSAVNRH SGLSSPASSS MMPSNLSDWG  600
SPDGKLDWGM QGEELNKLRK SASFGFRSSG GNYGAGMAAS SMAAATVDEP DVSWVQSLVV  660
DAPTSKSMQM NSFEDQQQCH FDSGASEMLP AWVEQMYMEQ EQLVA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00566DAPTransfer from AT5G58620Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010097625.10.0zinc finger CCCH domain-containing protein 66
SwissprotQ9LUZ40.0C3H66_ARATH; Zinc finger CCCH domain-containing protein 66
TrEMBLA0A2P5EIU40.0A0A2P5EIU4_TREOI; Transmembrane protein
STRINGXP_010097625.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.10.0C3H family protein