PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

HD-ZIP

Protein Properties

Length: 69aa MW: 8183.59 Da PI: 11.3742

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK15571.2	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	40.6	4.2e-13	3	29	30	56
HHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 30 reeLAkklgLterqVkvWFqNrRakek 56 + +LA++lgL+ rqV +WFqN+Ra++k PK15571.2 3 KLQLASELGLQPRQVAIWFQNKRARWK 29 679***********************9 PP
2	HD-ZIP_I/II	86.2	4.4e-28	1	66	27	92
HD-ZIP_I/II 27 erKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ++K +la+eLglqprqva+WFqn+RAR+k+kqlE+dy+ L ++y++l+++ ++L+ke++ L+ +++ PK15571.2 1 KKKLQLASELGLQPRQVAIWFQNKRARWKSKQLERDYSILLANYKNLASRFDALKKEKQGLALQVR 66 68***********************************************************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00086	8.33E-7	1	32	No hit	No description
PROSITE profile	PS50071	13.394	1	31	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-10	2	29	IPR001356	Homeobox domain
SuperFamily	SSF46689	4.71E-12	2	41	IPR009057	Homeodomain-like
PRINTS	PR00031	2.1E-6	2	11	IPR000047	Helix-turn-helix motif
Gene3D	G3DSA:1.10.10.60	1.4E-13	3	38	IPR009057	Homeodomain-like
PROSITE pattern	PS00027	0	6	29	IPR017970	Homeobox, conserved site
PRINTS	PR00031	2.1E-6	11	27	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.2E-13	31	66	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 69 aa Download sequence Send to blast
KKKLQLASEL GLQPRQVAIW FQNKRARWKS KQLERDYSIL LANYKNLASR FDALKKEKQG 60 LALQVRKNQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269\|PubMed:15604708, ECO:0000269\|PubMed:8771791}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024024137.1	1e-32	homeobox-leucine zipper protein ATHB-12
Swissprot	P46897	6e-27	ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBL	A0A2P5FIG7	9e-32	A0A2P5FIG7_TREOI; Octamer-binding transcription factor
TrEMBL	W9RLG5	7e-32	W9RLG5_9ROSA; Homeobox-leucine zipper protein ATHB-12
STRING	XP_010100685.1	1e-32	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5635	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	2e-29	homeobox 7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou SF, et al. Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis. New Phytol., 2015. 208(1): p. 188-97 [PMID:25919792]