PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PK15571.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

HD-ZIP

Protein Properties

Length: 218aa MW: 24804.3 Da PI: 9.0313

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK15571.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.4	6e-19	62	116	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++++f+++q++ Le++Fe++ + +++ +LA++lgL+ rqV +WFqN+Ra++k PK15571.1 62 NNKRRFSDDQIKSLESMFENETRLEPKKKLQLASELGLQPRQVAIWFQNKRARWK 116 56789*************************************************9 PP
2	HD-ZIP_I/II	117.8	6.1e-38	63	154	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +krr+s++q+k+LE++Fe+e++Lep++K +la+eLglqprqva+WFqn+RAR+k+kqlE+dy+ L ++y++l+++ ++L+ke++ L+ +l++ PK15571.1 63 NKRRFSDDQIKSLESMFENETRLEPKKKLQLASELGLQPRQVAIWFQNKRARWKSKQLERDYSILLANYKNLASRFDALKKEKQGLALQLQK 154 79************************************************************************************999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.88E-19	39	120	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.0E-20	53	118	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.107	58	118	IPR001356	Homeobox domain
SMART	SM00389	3.4E-17	60	122	IPR001356	Homeobox domain
Pfam	PF00046	2.1E-16	62	116	IPR001356	Homeobox domain
CDD	cd00086	1.04E-14	67	119	No hit	No description
PRINTS	PR00031	8.9E-6	89	98	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	93	116	IPR017970	Homeobox, conserved site
PRINTS	PR00031	8.9E-6	98	114	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.5E-14	118	158	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MFEDQNNIHG EYSYCPTSDR FDHNNSNINI HESSFSNSSS TSSSIGAGVQ VPAGNRKKKS 60 KNNKRRFSDD QIKSLESMFE NETRLEPKKK LQLASELGLQ PRQVAIWFQN KRARWKSKQL 120 ERDYSILLAN YKNLASRFDA LKKEKQGLAL QLQKLSGDLM QSSKDKDKDN DKVDKDSDNG 180 KVKTETDQSE VMKPSLSSLE RTEHVLGVLS SDDDSCMX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028206109.1	1e-62	homeobox-leucine zipper protein ATHB-12-like
TrEMBL	A0A2P5FIG7	3e-84	A0A2P5FIG7_TREOI; Octamer-binding transcription factor
STRING	GLYMA16G02390.1	7e-62	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5635	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46680.1	1e-43	homeobox 7