PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK15363.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NAC
Protein Properties Length: 512aa    MW: 58157 Da    PI: 4.6545
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK15363.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM166.31e-51141411127
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                lp GfrF+Ptdeelv++yL+ k++g++ ++ +vi+e+d++k+ePwd+p  + + +++ ew+fF+++d+ky++g+r nrat++gyWkatgkd+++ s +++
  PK15363.1  14 LPLGFRFRPTDEELVDFYLRLKINGEDEQV-SVIREIDVCKLEPWDMPdlSVIPTRDPEWFFFCPQDRKYPNGNRLNRATNAGYWKATGKDRKIRSGRTT 112
                699************************999.99**************96447777899**************************************9999 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyr 127
                ++g+kktLvfy+grapkg++t+Wvmheyr
  PK15363.1 113 EIGMKKTLVFYTGRAPKGKRTNWVMHEYR 141
                ****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-5810165IPR003441NAC domain
PROSITE profilePS5100555.94814165IPR003441NAC domain
PfamPF023651.6E-2715141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0002230Biological Processpositive regulation of defense response to virus by host
GO:0002237Biological Processresponse to molecule of bacterial origin
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 512 aa     Download sequence    Send to blast
MAVGEMKVSS LNSLPLGFRF RPTDEELVDF YLRLKINGED EQVSVIREID VCKLEPWDMP  60
DLSVIPTRDP EWFFFCPQDR KYPNGNRLNR ATNAGYWKAT GKDRKIRSGR TTEIGMKKTL  120
VFYTGRAPKG KRTNWVMHEY RPTLKELDGT NPGQNPFVIC RLFKKQDETV EGYKCEDAEP  180
ALSSPNAQCS IDDEESDLAV AQEPLPCVEQ ESKVSIRMEY PAAKTPEEIV TDFGCDANEA  240
EDNVKEESTS EVDVQLRQDL DMFYDPPSET YVDCKMFSPL HSQMQSELGS TCAYYPGTGE  300
NQYGTNESDD ITQFLNSILN DFEQNGSEEL SSGSIQVTDV HATRSVISDE GDMAEFGEEF  360
LNPINDLKPV LSNDAVIQIR RRSQPRQNQM TNDEIRARHG DASKRIRLQR KLQISCSFKS  420
FSKPEEEPNT TINKEKDAEQ HANDHPDEPL EKGTSREYYG KVKTRSFTIQ DTGKKVLKTS  480
LGGSNQTFSM MFRVAVIAVL FISFTSIWKC LV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-4511664166NO APICAL MERISTEM PROTEIN
1ut4_B2e-4511664166NO APICAL MERISTEM PROTEIN
1ut7_A2e-4511664166NO APICAL MERISTEM PROTEIN
1ut7_B2e-4511664166NO APICAL MERISTEM PROTEIN
3swm_A2e-4511667169NAC domain-containing protein 19
3swm_B2e-4511667169NAC domain-containing protein 19
3swm_C2e-4511667169NAC domain-containing protein 19
3swm_D2e-4511667169NAC domain-containing protein 19
3swp_A2e-4511667169NAC domain-containing protein 19
3swp_B2e-4511667169NAC domain-containing protein 19
3swp_C2e-4511667169NAC domain-containing protein 19
3swp_D2e-4511667169NAC domain-containing protein 19
4dul_A2e-4511664166NAC domain-containing protein 19
4dul_B2e-4511664166NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010103069.11e-174protein NTM1-like 9
TrEMBLA0A2P5EDU20.0A0A2P5EDU2_TREOI; NAC domain containing protein
STRINGXP_010103069.11e-173(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55513353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24590.21e-101TCV-interacting protein