PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK15234.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | ERF | ||||||||
Protein Properties | Length: 396aa MW: 44402.8 Da PI: 4.7317 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.5 | 1.8e-19 | 120 | 169 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a +++++g PK15234.1 120 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDAEARRIRG 169 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.7E-32 | 120 | 179 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-37 | 120 | 183 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.94E-22 | 120 | 179 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.999 | 120 | 177 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.93E-33 | 120 | 178 | No hit | No description |
Pfam | PF00847 | 4.4E-12 | 121 | 169 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 121 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 143 | 159 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 396 aa Download sequence Send to blast |
MCGGAIISDF ISTNAPPRST RLTSNYLWPD LKKSNSGKRF SKKSHLRSEI VDLDDDFEAD 60 FQGFKDESDV EYFDDDVVDV KPFAFTARNK PTVSRGSTTV KYTESDGLAE KSAKRKRKNQ 120 YRGIRQRPWG KWAAEIRDPR KGVRVWLGTF NTAEEAARAY DAEARRIRGS KAKVNFPDET 180 PRASPKRSAK DNLKRSLPKA NAVQSFESNM NASFDLGHNS DQDYYSAMGF LEEKPLTNHY 240 DYVESLPANQ EVGLKPTPAT STTPLYFSSD QGSNSFECSD FGWGERGSKT PEISSVLSAT 300 LESDDSLFLE DANPMKKLKS DSENVVPQAE ENNSKTLSEE LSSFESQMKY FQMPYLDGNW 360 DATSFESLLA GDTTQDGGNT MDLWSFDDFT MSGEAF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 120 | 177 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the activation of hypoxic gene expression and in ethylene response. Partially redundant with RAP2-2. Acts as a downstream regulator in the ethylene signaling pathway. {ECO:0000269|PubMed:22020282, ECO:0000269|PubMed:22530619}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by hypoxia but not by ethylene. {ECO:0000269|PubMed:22020282}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010089706.1 | 0.0 | ethylene-responsive transcription factor RAP2-12 | ||||
Refseq | XP_024016963.1 | 0.0 | ethylene-responsive transcription factor RAP2-12 | ||||
Refseq | XP_024016964.1 | 0.0 | ethylene-responsive transcription factor RAP2-12 | ||||
Swissprot | Q9SSA8 | 1e-86 | RA212_ARATH; Ethylene-responsive transcription factor RAP2-12 | ||||
TrEMBL | A0A2P5B8I2 | 0.0 | A0A2P5B8I2_PARAD; AP2/ERF transcription factor | ||||
STRING | XP_010089706.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4808 | 32 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 4e-87 | related to AP2 12 |