PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PK14727.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Trihelix

Protein Properties

Length: 272aa MW: 31161.9 Da PI: 6.3441

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK14727.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	109.5	2.1e-34	87	172	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW+k+ev+aLi++rr +e ++ ++ k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+k+++kkr +e+s+tcpyf+ql+a PK14727.1 87 RWPKSEVQALINLRRTLELKYHENGPKGPLWEEISAGMRRLGYNRSSKRCKEKWENINKYFKKVKDSNKKR-PEDSKTCPYFHQLDA 172 8*******************************************************************8.99*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.084	80	144	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	5.4E-5	81	143	IPR009057	Homeodomain-like
SMART	SM00717	1.0E-4	84	146	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	4.53E-5	84	146	IPR009057	Homeodomain-like
CDD	cd12203	1.45E-29	86	151	No hit	No description
Pfam	PF13837	7.0E-24	87	173	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
XKDAAVIAFL QKVSAGGGSS AVVVPQNNSS HLFLSNNYQD HNNHHHHHIP AVSLPPLPSP 60 QQQHQQQPTP PARPKLGDNS SNLSPSRWPK SEVQALINLR RTLELKYHEN GPKGPLWEEI 120 SAGMRRLGYN RSSKRCKEKW ENINKYFKKV KDSNKKRPED SKTCPYFHQL DALYREKTTI 180 KNNVVDQIQN NNVLTMEPLM VQPERQWPDQ STNNNSEEEE DDEDDHEILL DDDEERDSSS 240 TELDQDLDHH HHDNKQGGSY NSVVVDNKLQ SS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023878109.1	3e-63	trihelix transcription factor GT-2-like
TrEMBL	A0A2P5DSH1	5e-77	A0A2P5DSH1_PARAD; GAMYB transcription factor
STRING	XP_009787560.1	8e-60	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF373	34	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	4e-56	Trihelix family protein