PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK14700.3
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HSF
Protein Properties Length: 339aa    MW: 39142.6 Da    PI: 5.2205
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK14700.3genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.82.6e-36271192103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sws++g+sfvv+d++ fa ++Lp+yFkh+nf+SFvRQLn+YgF+k++ ++         weF+++ F +++k+ll++i+
     PK14700.3  27 FLTKTYDMVDDPSTNRIVSWSKDGTSFVVWDPHAFALNLLPRYFKHNNFSSFVRQLNTYGFRKIDADR---------WEFANEGFIRDQKHLLKSIR 114
                   9****************************************************************999.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r++ +
     PK14700.3 115 RRRAS 119
                   *9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467856.67E-3723116IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.7E-3923116IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.1E-6223116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-212750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004476.2E-3327116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-216577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.9E-217890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
XGGESQPLTM PPPQPMEGLH DVGPPPFLTK TYDMVDDPST NRIVSWSKDG TSFVVWDPHA  60
FALNLLPRYF KHNNFSSFVR QLNTYGFRKI DADRWEFANE GFIRDQKHLL KSIRRRRASS  120
QPFPHEQQAL GPCVEVGRFG LDAEIDRLRR DKQVLMMELV KLRQQQQNTR AYLQAMEQRL  180
QGTEMKQQQM MAFLARAMKN PAFLQQLLQQ KERRKVIEEA MTKKRRRPID QGPSSRSSGI  240
ETSHGSIKVE PLESSDYGFE VSELEALAFE MQGFGKLRME QEEGDEELEP PESGDRELDD  300
GFWEELFSED AKGVEDEDVN VLTDHFGCLG SSPRYKSXW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-242511918123Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103116RDQKHLLKSIRRRR
2212226RRKVIEEAMTKKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015891434.10.0heat stress transcription factor A-7a-like
RefseqXP_015891435.10.0heat stress transcription factor A-7a-like
RefseqXP_024932846.10.0heat stress transcription factor A-7a-like
RefseqXP_024933008.10.0heat stress transcription factor A-7a-like isoform X2
SwissprotQ9LUH81e-125HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A2P5FB070.0A0A2P5FB07_TREOI; Heat shock transcription factor
STRINGXP_010087101.11e-178(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-118heat shock transcription factor A6B