PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

PK14657.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

bHLH

Protein Properties

Length: 222aa MW: 23767.3 Da PI: 7.674

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK14657.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.7	6.4e-11	162	209	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++YI+sLq PK14657.1 162 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 209 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.93E-10	156	213	No hit	No description
SuperFamily	SSF47459	3.01E-17	156	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-17	158	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.828	158	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-8	162	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.0E-10	164	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MDPTFINESS FSAANPSSYS LAEIWPFGGE PGGVSGLGLR MSHMSQNPSG LGESSGNRDG 60 SMKESTVTGQ SGGGGGRKRR DVSSEDESSK VVSTSSANEL NNSNGKRTKL SGSKHENGAS 120 KVEVESSSVV GDKPGEQASI PSEPPKQDYI HVRARRGQAT DSHSLAERAR REKISERMKI 180 LQDLVPGCNK VIGKALVLDE IINYIQSLQR QVEFLSMKLE TV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018831619.1	1e-120	PREDICTED: transcription factor bHLH79-like isoform X1
Swissprot	Q9LV17	1e-74	BH079_ARATH; Transcription factor bHLH79
TrEMBL	A0A2P5CJ48	1e-142	A0A2P5CJ48_PARAD; Basic helix-loop-helix transcription factor
TrEMBL	A0A2P5F690	1e-142	A0A2P5F690_TREOI; Basic helix-loop-helix transcription factor
STRING	XP_006476705.1	1e-114	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1171	34	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62610.1	3e-54	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]