PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK14490.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family AP2
Protein Properties Length: 295aa    MW: 32346.8 Da    PI: 8.5882
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK14490.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.53e-17163212155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  PK14490.1 163 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 212
                78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-9163212IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-16163221IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.6E-17164221IPR001471AP2/ERF domain
SMARTSM003808.0E-33164226IPR001471AP2/ERF domain
PROSITE profilePS5103217.794164220IPR001471AP2/ERF domain
CDDcd000181.84E-11164222No hitNo description
SMARTSM003803.1E-4256295IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MLDLNLNVHS ADSARNDDSS MVLDKVPQGS GTPMDESGTS NSSIVNADAS SNVGDDESCS  60
ARAGVSDVYT FSFDILKVGA ENDVVVTKEL FPMGGGGNGD FKDWQGQLSS ASSSSSSSRR  120
NWIELGFDQS GSGEVRVLEA APPLNPQPQP VKKSRRGPRS RSSQYRGVTF YRRTGRWESH  180
IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF RGVDADINFN LSDYDEDLKQ MKNLTKEEFV  240
HILRRQSTGF SRGSSKYRGV TLHKCGRWEA RMGQFLGKKA YDKAAIKCNG REAVT
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008463880.11e-150PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X2
SwissprotQ9SK031e-106RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A2P5CMZ21e-148A0A2P5CMZ2_PARAD; AP2/ERF transcription factor
STRINGXP_008463879.11e-145(Cucumis melo)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28073476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.21e-107related to AP2.7