PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

WOX

Protein Properties

Length: 223aa MW: 25398.3 Da PI: 4.7086

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK14252.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	66.6	3.2e-21	81	141	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ F + n +p++++++e++++l +++e++V++WFqNrRa+ k+ PK14252.1 81 RQRWSPTPLQLQILERIFDEgNGTPTKQKIKEITSELtqhgQISETNVYNWFQNRRARSKR 141 89***************99************************************97 PP
2	Wus_type_Homeobox	99.9	1.9e-32	80	143	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+Ptp Q++iLe+++++G tP+k++i++it+eL+++G+i+++NV++WFQNr+aR+++kq PK14252.1 80 SRQRWSPTPLQLQILERIFDEGNGTPTKQKIKEITSELTQHGQISETNVYNWFQNRRARSKRKQ 143 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.7E-17	77	146	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.289	77	142	IPR001356	Homeobox domain
SMART	SM00389	2.6E-13	79	146	IPR001356	Homeobox domain
SuperFamily	SSF46689	3.59E-18	80	145	IPR009057	Homeodomain-like
Pfam	PF00046	6.3E-19	81	141	IPR001356	Homeobox domain
CDD	cd00086	8.19E-15	81	143	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MENESSKEEM VTGSNGLFVK VMTDEQMELL RRQISVYATI CEKLAEMHKA ISTHHDFSGM 60 KLGAFHCDPL MAYAGHKITS RQRWSPTPLQ LQILERIFDE GNGTPTKQKI KEITSELTQH 120 GQISETNVYN WFQNRRARSK RKQSVSAPPN NMEPEAETET EFVKDNTKPE DNEFYDNSVP 180 MDSTTNDVYF PSPEELISWS TNGGVLELQP FPSWGGGFNV DDL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	134	142	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024020122.1	1e-105	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	8e-71	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A2P5EHA6	1e-123	A0A2P5EHA6_TREOI; Homeodomain transcription factor
STRING	XP_010094567.1	1e-96	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1855	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	4e-67	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]