PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK13470.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family ERF
Protein Properties Length: 308aa    MW: 34561.4 Da    PI: 5.1605
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK13470.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.8e-20115164255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 y+G+r+++ +g+W+AeIrdp     +  r++lg++ tae+Aa+a+++a+k+++g
  PK13470.1 115 VYRGIRQRP-WGKWAAEIRDPH----KgSRVWLGTYNTAEQAARAYDEAAKRIRG 164
                69*******.**********72....35************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.565115172IPR001471AP2/ERF domain
SuperFamilySSF541715.69E-22115173IPR016177DNA-binding domain
PfamPF008471.5E-14115164IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-32115173IPR001471AP2/ERF domain
SMARTSM003801.6E-35115178IPR001471AP2/ERF domain
CDDcd000186.33E-32116173No hitNo description
PRINTSPR003672.1E-11116127IPR001471AP2/ERF domain
PRINTSPR003672.1E-11138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MCGGAIISDF VAGKRGRKLT KEDIWSDLDT ISELFGLDSN YFNGSSTEPQ QHSNNLFHHV  60
TTSQNPKRPT TKVVIKKDNK AEKLNNRVKE EDDEGDNNSS SSSTKTKSRR ARKNVYRGIR  120
QRPWGKWAAE IRDPHKGSRV WLGTYNTAEQ AARAYDEAAK RIRGDKAKLN FAAEQQPASD  180
TPPLKKQCVV SAEMMMSTDQ PQTTSYASTA FAPMFENELL ADGFYCKDEE AVIEPSEIEL  240
DEQILSLESL LGMELADVAA EPSQMMSGSG TTSQEVVEEE GAESVMSLWM LDDVVTHQQH  300
RHQRILYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-22116171359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2P5CLP12e-77A0A2P5CLP1_PARAD; AP2/ERF transcription factor
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48923353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.11e-42ethylene-responsive element binding protein