PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PK13272.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

HB-other

Protein Properties

Length: 1741aa MW: 196288 Da PI: 4.9661

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK13272.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	55.5	9.5e-18	31	86	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ + yps++ r+eL+kkl Lt+rq ++WF+ rR k+kk PK13272.1 31 PKRQMKTPFQLETLEKAYALEAYPSETIRAELSKKLALTDRQLQMWFCHRRLKDKK 86 69****************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.0E-16	12	87	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.2E-15	20	87	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.309	27	87	IPR001356	Homeobox domain
SMART	SM00389	3.8E-16	29	91	IPR001356	Homeobox domain
Pfam	PF00046	2.3E-15	31	86	IPR001356	Homeobox domain
CDD	cd00086	8.23E-13	32	87	No hit	No description
SMART	SM00571	2.0E-20	529	588	IPR018501	DDT domain
PROSITE profile	PS50827	16.083	529	588	IPR018501	DDT domain
Pfam	PF02791	1.6E-16	531	585	IPR018501	DDT domain
Pfam	PF05066	1.7E-15	711	779	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.9E-5	921	961	IPR028942	WHIM1 domain
Pfam	PF15613	1.1E-12	1106	1178	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1741 aa Download sequence Send to blast
MEAASEEENQ IKNDHNVNNK INSSNEGQSK PKRQMKTPFQ LETLEKAYAL EAYPSETIRA 60 ELSKKLALTD RQLQMWFCHR RLKDKKEGGP AKKQKKMVVA AMPESPPIDE LRVGAELGSD 120 YGSGSGSGSS PFGPSAELRN VASRSLGDDM PPIGRRYYEP RQSKMELRAI AIVEEQVGEP 180 LREDGPILGI EFDSLPPDAF GAPIVAEHKR SGHRYEGKSY AKSNKATPRA VHEYAFLPDP 240 SSGHNDAYGQ VSQSHIHNSG NEQLPRSQGH GSRVRHSSGP DKQIIPFPSP SVDDTSLPKD 300 SFTNIRVNPH ISDNPIISPE NNYMLPDGQI CPNEAVLRLE RKRKLEEARI TKEAEIQEIR 360 MRKELEKQEN LRRKHEERLR KEMERQNRER RKEEERLMRE KQREEERSKR EQKREMERRE 420 KFLQKECLRL EKKRQREELR KEKEAVRRKA ALEKATARRI ARESMELIED EQLELMEIAA 480 AQKGLPSIVS LDHDTLQSLE SLRDFLVAFP PKSVQLKRPF AIQPWTNSEK NIGNLLMVWR 540 FLITFADVLG LWPFTIDEFV QSFHDYDSRL LGEIHVSLLK LIIKDIEDVA RTPSSGLGMS 600 QNGAANPGGG HPEIVEGAYT WGFDIRNWQR HLNPLTWPEI FRQLALSAGF GPQLKKRSIA 660 WSYLPDNDEG KSCADVISTI RSGSAAENAF ALMQEKGLLL PRRSRHRLTP GTVKFAAFHV 720 LSLEGSKGLT VLELAEKIQK SGLRDLTTSK TPEASISVAL TRDAKLFERI APSTYRVRAA 780 YRKDPADAEA ILSAARKKVQ VFENGFLAVE DVDEVERDED SECEDVDEDP EVDDLATPSS 840 VNIITEDYKE LNTCSGSGKD NLCNDVALVP QTEFDKDSLS VPLSGSQDAK CLSATPVCFV 900 GSEDVRGSAP DEENIEIDES NSGESWIHGL TEGEYSDLSV EERLDAIVTL IGIANEGNSI 960 RLVLEDRLEA ANALKKQMWA EAHVDKGRLK EENVIKVDFS SQVGGKAEMH LARSAADGSQ 1020 SPLPDIDNRN TDMSLSVAEN QRSVYDLNSL QTDLNTLPAD KASVAHEFST GPDNFLTQQL 1080 AFASKRSRSQ LKSYIAHRAE EMYVYRSLPL GQDRRRNRYW QFVASASSND PGSGRVFVEL 1140 HDGNWRIIDT EEAFDTLLTS LDARGIRESH LRLMLQKIET SFKENVRRSV QYSSTTGRGL 1200 TAVKCETDGT KYSPDYHTGF DSPGSIICGT NSDSDNLETS TSFKIELGRS DSEKKAALKR 1260 YHDFQKWMWN ECLNSSTLRA LKYGKKRSAQ LLEICDFCII SYYFEDSHCV SCHQTFHTTS 1320 NDLKFSQHVI QCKEERKSDP RNIHVLDTSL PLGSRLLKAL LAVVETSVPP EALHSFWTLD 1380 HRKSWGRNLN ASFSSEQLLQ ILTIFEGSIR RDFLSSTFAA TDELLGSRNC SSNALHDYSD 1440 HGSVSILPWI PLTCAAVALR LFELDASITY LPEEKPEPAE DKEFGEYIKL PSRFTPQSND 1500 KDIELNQLDY NEYVREENYS QKSLQNNYKR GRGGRDQARG KKLQKRANGS KSAVARRNSN 1560 QGLRQPGRTL KQVGGRGRRT VRKRRPESKV VEETVPVHMV DIHSSPESGG ESTRNFGEDW 1620 NYEKVDADHY MDDDNIIGED AMESDDNAQE EEYEQGNWEV SYNGVASDWN GGLMDESDED 1680 EDEDEDDADA DAFEEDDNGM AEVEEDSEGD VDVSEDDGSD EIQHPQNIEG SDFSASEDYS 1740 D

Sequence ? help Back to Top

Protein Sequence Length: 1741 aa Download sequence Send to blast

MEAASEEENQ IKNDHNVNNK INSSNEGQSK PKRQMKTPFQ LETLEKAYAL EAYPSETIRA  60
ELSKKLALTD RQLQMWFCHR RLKDKKEGGP AKKQKKMVVA AMPESPPIDE LRVGAELGSD  120
YGSGSGSGSS PFGPSAELRN VASRSLGDDM PPIGRRYYEP RQSKMELRAI AIVEEQVGEP  180
LREDGPILGI EFDSLPPDAF GAPIVAEHKR SGHRYEGKSY AKSNKATPRA VHEYAFLPDP  240
SSGHNDAYGQ VSQSHIHNSG NEQLPRSQGH GSRVRHSSGP DKQIIPFPSP SVDDTSLPKD  300
SFTNIRVNPH ISDNPIISPE NNYMLPDGQI CPNEAVLRLE RKRKLEEARI TKEAEIQEIR  360
MRKELEKQEN LRRKHEERLR KEMERQNRER RKEEERLMRE KQREEERSKR EQKREMERRE  420
KFLQKECLRL EKKRQREELR KEKEAVRRKA ALEKATARRI ARESMELIED EQLELMEIAA  480
AQKGLPSIVS LDHDTLQSLE SLRDFLVAFP PKSVQLKRPF AIQPWTNSEK NIGNLLMVWR  540
FLITFADVLG LWPFTIDEFV QSFHDYDSRL LGEIHVSLLK LIIKDIEDVA RTPSSGLGMS  600
QNGAANPGGG HPEIVEGAYT WGFDIRNWQR HLNPLTWPEI FRQLALSAGF GPQLKKRSIA  660
WSYLPDNDEG KSCADVISTI RSGSAAENAF ALMQEKGLLL PRRSRHRLTP GTVKFAAFHV  720
LSLEGSKGLT VLELAEKIQK SGLRDLTTSK TPEASISVAL TRDAKLFERI APSTYRVRAA  780
YRKDPADAEA ILSAARKKVQ VFENGFLAVE DVDEVERDED SECEDVDEDP EVDDLATPSS  840
VNIITEDYKE LNTCSGSGKD NLCNDVALVP QTEFDKDSLS VPLSGSQDAK CLSATPVCFV  900
GSEDVRGSAP DEENIEIDES NSGESWIHGL TEGEYSDLSV EERLDAIVTL IGIANEGNSI  960
RLVLEDRLEA ANALKKQMWA EAHVDKGRLK EENVIKVDFS SQVGGKAEMH LARSAADGSQ  1020
SPLPDIDNRN TDMSLSVAEN QRSVYDLNSL QTDLNTLPAD KASVAHEFST GPDNFLTQQL  1080
AFASKRSRSQ LKSYIAHRAE EMYVYRSLPL GQDRRRNRYW QFVASASSND PGSGRVFVEL  1140
HDGNWRIIDT EEAFDTLLTS LDARGIRESH LRLMLQKIET SFKENVRRSV QYSSTTGRGL  1200
TAVKCETDGT KYSPDYHTGF DSPGSIICGT NSDSDNLETS TSFKIELGRS DSEKKAALKR  1260
YHDFQKWMWN ECLNSSTLRA LKYGKKRSAQ LLEICDFCII SYYFEDSHCV SCHQTFHTTS  1320
NDLKFSQHVI QCKEERKSDP RNIHVLDTSL PLGSRLLKAL LAVVETSVPP EALHSFWTLD  1380
HRKSWGRNLN ASFSSEQLLQ ILTIFEGSIR RDFLSSTFAA TDELLGSRNC SSNALHDYSD  1440
HGSVSILPWI PLTCAAVALR LFELDASITY LPEEKPEPAE DKEFGEYIKL PSRFTPQSND  1500
KDIELNQLDY NEYVREENYS QKSLQNNYKR GRGGRDQARG KKLQKRANGS KSAVARRNSN  1560
QGLRQPGRTL KQVGGRGRRT VRKRRPESKV VEETVPVHMV DIHSSPESGG ESTRNFGEDW  1620
NYEKVDADHY MDDDNIIGED AMESDDNAQE EEYEQGNWEV SYNGVASDWN GGLMDESDED  1680
EDEDEDDADA DAFEEDDNGM AEVEEDSEGD VDVSEDDGSD EIQHPQNIEG SDFSASEDYS  1740
D

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	79	86	RRLKDKKE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269\|PubMed:22694359}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024031043.1	0.0	homeobox-DDT domain protein RLT1 isoform X1
Refseq	XP_024031044.1	0.0	homeobox-DDT domain protein RLT1 isoform X1
Swissprot	F4HY56	0.0	RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBL	A0A2P5CI27	0.0	A0A2P5CI27_TREOI; Octamer-binding transcription factor
STRING	XP_010111176.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28420.1	0.0	homeobox-1