PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK12901.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

NAC

Protein Properties

Length: 204aa MW: 23620.8 Da PI: 4.9479

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK12901.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	114	1.6e-35	11	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 lppGfrF Ptdeelvv++L++kv+ +++ +vi+++++y ++Pw+L+ k+ +e+++wyf+s++ +nr+t++gyWka g +++v ++ + ++ PK12901.1 11 LPPGFRFYPTDEELVVHFLHRKVSLLPCHP-DVIPDLELYPYDPWELDGKALGEDNKWYFYSRKT--------QNRVTRNGYWKALGIEESVNNNtTYKK 101 79***********************999.99**********977778999*9974........5899***********99867788 PP NAM 100 vglkktLvfy.........kgrapkgektdWvmheyrl 128 vg+kk +vfy +++++ + kt+W+mhe++l PK12901.1 102 VGTKKYFVFYvgdlpnnnnNNSSSPAIKTNWIMHEFHL 139 ******88888765434555557*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.28E-44	8	174	IPR003441	NAC domain
PROSITE profile	PS51005	42.606	11	175	IPR003441	NAC domain
Pfam	PF02365	4.6E-24	12	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
XNNNNDNNVN LPPGFRFYPT DEELVVHFLH RKVSLLPCHP DVIPDLELYP YDPWELDGKA 60 LGEDNKWYFY SRKTQNRVTR NGYWKALGIE ESVNNNTTYK KVGTKKYFVF YVGDLPNNNN 120 NNSSSPAIKT NWIMHEFHLS DSASASTSST RSSSKRRSSN KIDYSKWVLC RVYERDEDDD 180 GTELSCLDEV FLSLDDLDEI SLPN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-37	7	176	13	166	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-37	7	176	13	166	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-37	7	176	13	166	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-37	7	176	13	166	NO APICAL MERISTEM PROTEIN
3swm_A	3e-37	7	176	16	169	NAC domain-containing protein 19
3swm_B	3e-37	7	176	16	169	NAC domain-containing protein 19
3swm_C	3e-37	7	176	16	169	NAC domain-containing protein 19
3swm_D	3e-37	7	176	16	169	NAC domain-containing protein 19
3swp_A	3e-37	7	176	16	169	NAC domain-containing protein 19
3swp_B	3e-37	7	176	16	169	NAC domain-containing protein 19
3swp_C	3e-37	7	176	16	169	NAC domain-containing protein 19
3swp_D	3e-37	7	176	16	169	NAC domain-containing protein 19
4dul_A	3e-37	7	176	13	166	NAC domain-containing protein 19
4dul_B	3e-37	7	176	13	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010103879.1	1e-105	NAC domain-containing protein 104 isoform X1
Swissprot	Q8GWK6	5e-85	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A2P5DRY6	1e-106	A0A2P5DRY6_PARAD; NAC domain containing protein
STRING	XP_010103879.1	1e-104	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1736	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	2e-81	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]