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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK12518.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | bHLH | ||||||||
Protein Properties | Length: 149aa MW: 16757.9 Da PI: 8.8533 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 22.4 | 2.1e-07 | 105 | 145 | 11 | 55 |
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 RR++i +++ L+el+P + +k Ka +L + ++Y++sLq PK12518.2 105 VRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 145 6*******************....999*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.268 | 94 | 144 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.1E-11 | 104 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.07E-11 | 105 | 149 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.33E-6 | 106 | 149 | No hit | No description |
Pfam | PF00010 | 1.9E-4 | 106 | 145 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 149 aa Download sequence Send to blast |
MDLSGDNSNV RKEPDEKKLK TEEFTSGNMR SKPTAAAGKQ AKESSNSGDA QKDNYIHVRA 60 RRGQATNSHS LAERVGSPSV PHNKQIPSCF HIYCETIELS FQLQVRREKI SERMRLLQEL 120 VPGCNKITGK AVMLDEIINY VQSLQQQVE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004290997.1 | 1e-49 | PREDICTED: transcription factor bHLH74 | ||||
Swissprot | Q6NKN9 | 1e-36 | BH074_ARATH; Transcription factor bHLH74 | ||||
TrEMBL | A0A2P5G143 | 1e-54 | A0A2P5G143_TREOI; Basic helix-loop-helix transcription factor | ||||
STRING | XP_004290997.1 | 5e-49 | (Fragaria vesca) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7585 | 33 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G10120.1 | 5e-39 | bHLH family protein |
Publications ? help Back to Top | |||
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