PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK12518.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family bHLH
Protein Properties Length: 440aa    MW: 47746.2 Da    PI: 6.0642
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK12518.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.4e-10278326355
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++i +++  L+el+P +    +k   Ka +L + ++Y++sLq
  PK12518.1 278 NSHSLAERVRREKISERMRLLQELVPGC----NKITGKAVMLDEIINYVQSLQ 326
                58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.70E-11273330No hitNo description
SuperFamilySSF474597.07E-17273342IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.485275325IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-16276343IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.9E-7278326IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-10281331IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MSGQENEDVG FQHRSHFLNC PSSGMSTNAL PEKVSGIPLS SLTMFKPSNG QEHFFPSGWD  60
PLVSLSQSEN FGGSSVISHG EFCNPSYPVA LENQGMSSNS QLVQYPSDSS FVEMVPKLSC  120
FDNAGFSEMV GSFGLPQCAE IASNTNGCPQ NYTLNKEKGS ERTSRIGTQS QDGCQISDGA  180
IGSSPTGKRR KRVPDLCFPL SPEKNAEGEQ QMDLSGDNSN VRKEPDEKKL KTEEFTSGNM  240
RSKPTAAAGK QAKESSNSGD AQKDNYIHVR ARRGQATNSH SLAERVRREK ISERMRLLQE  300
LVPGCNKITG KAVMLDEIIN YVQSLQQQVE FLSMKLATVN PELNIDIERL LSKDASQILN  360
SRGSNAAIFG LGPGMGSSSQ HYPHGIFQAN LPSIPSSAQQ FASLPQAVLD NELQGLFHMG  420
YDSTASIDNL GPNGRLKPEL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010109419.20.0transcription factor bHLH74
RefseqXP_024029922.10.0transcription factor bHLH74
RefseqXP_024029923.10.0transcription factor bHLH74
TrEMBLA0A2P5G1430.0A0A2P5G143_TREOI; Basic helix-loop-helix transcription factor
STRINGXP_008220406.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75853345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.12e-83bHLH family protein