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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK12240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | TCP | ||||||||
Protein Properties | Length: 130aa MW: 15159.9 Da PI: 10.7129 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 137.5 | 1.1e-42 | 5 | 130 | 2 | 125 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg.....kaaksaa 95 agkkdrhski+T++g+RdRR+Rls+++a++fFdLqd+LGfdk+skti+WL++++k+ai el ++ +s+++ +++++ + + k++++a PK12240.1 5 AGKKDRHSKISTAQGLRDRRMRLSLQIARKFFDLQDMLGFDKASKTIDWLFNKSKTAITELKDSMITSNNNDdNDHDEDDDD-----DlvvvmKNNEAAG 99 89**************************************************************555553332223333333.....1344544444555 PP TCP 96 kskksqksaasalnlak.esrakarararer 125 +k+ k+ + +++l + esr arararer PK12240.1 100 RDNKKMKNMNVVRKLVAkESRDMARARARER 130 555555555555555545***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.7E-37 | 6 | 130 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 35.665 | 7 | 65 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 9.421 | 117 | 130 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
XRRRAGKKDR HSKISTAQGL RDRRMRLSLQ IARKFFDLQD MLGFDKASKT IDWLFNKSKT 60 AITELKDSMI TSNNNDDNDH DEDDDDDLVV VMKNNEAAGR DNKKMKNMNV VRKLVAKESR 120 DMARARARER |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that prevents axillary bud outgrowth. May also delay early axillary bud development. Probably involved in the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021634680.1 | 2e-37 | transcription factor TCP12-like | ||||
Swissprot | A0AQW4 | 3e-32 | TCP12_ARATH; Transcription factor TCP12 | ||||
TrEMBL | A0A2C9ULA8 | 3e-36 | A0A2C9ULA8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_025363m | 7e-37 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 1e-32 | TCP domain protein 12 |