PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK12075.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family HSF
Protein Properties Length: 71aa    MW: 8602.34 Da    PI: 10.9036
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK12075.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind89.73.6e-2837026102
                   SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  26 nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkks 102
                   +sf+v+d++ef+k++LpkyFkhsnf+SF+RQLn+YgFkk++ ++         weF++k F+ gkk+ll++ikr+++
     PK12075.1   3 DSFIVWDSHEFSKNLLPKYFKHSNFSSFIRQLNTYGFKKIDPDR---------WEFANKGFQGGKKHLLKDIKRRSK 70 
                   79***************************************999.........**********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.2E-26168IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.6E-24368IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.6E-27368IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.5E-23368IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.7E-101729IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043401842IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.7E-103042IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
XRDSFIVWDS HEFSKNLLPK YFKHSNFSSF IRQLNTYGFK KIDPDRWEFA NKGFQGGKKH  60
LLKDIKRRSK X
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-1536844120Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16167LKDIKRR
Functional Description ? help Back to Top
Source Description
UniProtSeed-specific transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). Seems to be specialized for the developmental expression of heat shock protein (HSP) genes during seed maturation. Activated by ABI3. {ECO:0000269|PubMed:17220197}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309214.32e-39heat shock factor protein HSF30
RefseqXP_028787453.11e-39heat shock factor protein HSF30-like
SwissprotQ9LVW25e-38HSFA9_ARATH; Heat stress transcription factor A-9
TrEMBLA0A2P5EFV49e-41A0A2P5EFV4_TREOI; Heat shock transcription factor
STRINGLus100119411e-39(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15923395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54070.12e-40heat shock transcription factor A9