PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK11310.3

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

SBP

Protein Properties

Length: 144aa MW: 16375.7 Da PI: 8.7524

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK11310.3	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	76.2	5.4e-24	85	136	1	52
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEET CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhel 52 +C+ve+C++dl++ak+y+rrhkvC++hska+++lvs+++qrfCqqCsrf+ l PK11310.3 85 MCKVEDCSVDLTTAKDYNRRHKVCDMHSKATKALVSNTMQRFCQQCSRFYFL 136 6************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	8.4E-24	79	134	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	19.17	83	144	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.44E-22	84	136	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	3.9E-17	86	134	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MEAKIGGKGS LEWDLNDWRW DGDLFNATPS LNSFPSSAHL SKNKRALLVH EEESNVSLKL 60 KLSISEESEV KKLKTVETSS SKSVMCKVED CSVDLTTAKD YNRRHKVCDM HSKATKALVS 120 NTMQRFCQQC SRFYFLFSVI VSKF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj0_A	3e-21	83	136	3	56	squamosa promoter-binding protein-like 12
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021640197.1	9e-38	squamosa promoter-binding-like protein 1
Swissprot	Q9SMX9	8e-31	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A075FET0	2e-36	A0A075FET0_SALMI; SQUAMOSA promoter binding protein-like 13 (Fragment)
STRING	POPTR_0010s16370.2	2e-36	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	2e-29	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]