PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

PK11310.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

SBP

Protein Properties

Length: 903aa MW: 102151 Da PI: 8.3906

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK11310.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	121	5.7e-38	85	162	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +C+ve+C++dl++ak+y+rrhkvC++hska+++lvs+++qrfCqqCsrfh l+efD++krsCrrrLa+hn+rrr++++ PK11310.1 85 MCKVEDCSVDLTTAKDYNRRHKVCDMHSKATKALVSNTMQRFCQQCSRFHLLQEFDQGKRSCRRRLAGHNNRRRRRKT 162 6************************************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	4.0E-31	79	147	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.633	83	160	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.35E-35	84	162	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.8E-27	86	159	IPR004333	Transcription factor, SBP-box
CDD	cd00204	3.12E-8	670	781	No hit	No description
SuperFamily	SSF48403	9.95E-8	670	778	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	5.1E-8	670	818	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	9.543	714	786	IPR020683	Ankyrin repeat-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 903 aa Download sequence Send to blast
MEAKIGGKGS LDWDLNDWRW DGDLFNATPS LNSFPSSAHL SKNKRALLVH EEESNVSLKL 60 KLSISEESEV KKLKTVETSS SKSVMCKVED CSVDLTTAKD YNRRHKVCDM HSKATKALVS 120 NTMQRFCQQC SRFHLLQEFD QGKRSCRRRL AGHNNRRRRR KTHPDSTLHD EKNTNYLLLS 180 LLRILSNMHS NSSDQTRDQD VLSCLLKNLA NISSSVDGRR YMSTVLQNSQ GLINAGTSVM 240 ASQKPIGIIS DTLFGSASKV NDEPIILGTP LKSVSDMTLK KVCGVDSNDG NMQTFSAKSI 300 KLNNIDLNIV YDDSHLPLTS DTVSLNNPLS SYPRQNSNSS SSGEAQSRTN RIVFKLFGKE 360 PEDLPFLLRA QILNWLSHFP TDIESYIRPG CVILTIYLHL EKMTWEELQC DLGSCLKRLL 420 AASNDPFWRT GWVYSRVQNH VAFMHNGQLV LDTFLPQKSY KNCRISSIKP VAVALSERAQ 480 FEVKGFNLFH PSMRLMCALD GKYLVQEFCN ELVDNTTSTT AEHDEIQRLK FSCSIPTVTG 540 RGFIEVEDYG FSSSFFPFIV AEKEVCTEIC MLQGAIEVEE TAGDAVKAKN QALDFVHEMG 600 WLLHRSHAKL RLGPMDPNSD LFPFRRFKKL MEFSMDHDWC CVVKKLLCIL FEGIVDAGEH 660 PSIEVAILDM SLLHRAVQRN SQPMVDNLLK FVIPQKIMDK SQVLLFKADH VGAMGLTPLH 720 VAANQGGCDG VLDALTDDPG KVGIEVWKNA RDEKGLTPND YACLRGHYSY IQLVKRKMSN 780 IPSSSSSTTT SASSESEHVA VDILDDDNSN NNNTNKQQKQ RWKGGNMEIE KYKMKEYCRR 840 WHWHKQRQMQ HKRRNSLVYK PAMMCLVGIA AVCVCVALLF KSSPEVLYVF KPFRWERLKY 900 GSS

Sequence ? help Back to Top

Protein Sequence Length: 903 aa Download sequence Send to blast

MEAKIGGKGS LDWDLNDWRW DGDLFNATPS LNSFPSSAHL SKNKRALLVH EEESNVSLKL  60
KLSISEESEV KKLKTVETSS SKSVMCKVED CSVDLTTAKD YNRRHKVCDM HSKATKALVS  120
NTMQRFCQQC SRFHLLQEFD QGKRSCRRRL AGHNNRRRRR KTHPDSTLHD EKNTNYLLLS  180
LLRILSNMHS NSSDQTRDQD VLSCLLKNLA NISSSVDGRR YMSTVLQNSQ GLINAGTSVM  240
ASQKPIGIIS DTLFGSASKV NDEPIILGTP LKSVSDMTLK KVCGVDSNDG NMQTFSAKSI  300
KLNNIDLNIV YDDSHLPLTS DTVSLNNPLS SYPRQNSNSS SSGEAQSRTN RIVFKLFGKE  360
PEDLPFLLRA QILNWLSHFP TDIESYIRPG CVILTIYLHL EKMTWEELQC DLGSCLKRLL  420
AASNDPFWRT GWVYSRVQNH VAFMHNGQLV LDTFLPQKSY KNCRISSIKP VAVALSERAQ  480
FEVKGFNLFH PSMRLMCALD GKYLVQEFCN ELVDNTTSTT AEHDEIQRLK FSCSIPTVTG  540
RGFIEVEDYG FSSSFFPFIV AEKEVCTEIC MLQGAIEVEE TAGDAVKAKN QALDFVHEMG  600
WLLHRSHAKL RLGPMDPNSD LFPFRRFKKL MEFSMDHDWC CVVKKLLCIL FEGIVDAGEH  660
PSIEVAILDM SLLHRAVQRN SQPMVDNLLK FVIPQKIMDK SQVLLFKADH VGAMGLTPLH  720
VAANQGGCDG VLDALTDDPG KVGIEVWKNA RDEKGLTPND YACLRGHYSY IQLVKRKMSN  780
IPSSSSSTTT SASSESEHVA VDILDDDNSN NNNTNKQQKQ RWKGGNMEIE KYKMKEYCRR  840
WHWHKQRQMQ HKRRNSLVYK PAMMCLVGIA AVCVCVALLF KSSPEVLYVF KPFRWERLKY  900
GSS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	1e-27	78	159	3	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	160	RRRLAGHNNRRRRRK
2	148	159	RLAGHNNRRRRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010099719.1	0.0	squamosa promoter-binding-like protein 12 isoform X1
TrEMBL	W9RIZ1	0.0	W9RIZ1_9ROSA; Squamosa promoter-binding-like protein 12
STRING	XP_010099719.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1539	34	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1