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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK11281.3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | NAC | ||||||||
Protein Properties | Length: 636aa MW: 71999.2 Da PI: 4.3892 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.3 | 1.8e-50 | 10 | 136 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 ppGfrF Ptdeelv +yLk+k+ gkkl+l +vi e+d+yk+eP++Lp + +k+++++w+fFs+rd+k+++g r+nr tk+gyWkatgk+++++s +++ PK11281.3 10 PPGFRFYPTDEELVLYYLKRKICGKKLRL-NVIGETDVYKFEPEELPgMsILKTGDRQWFFFSPRDRKHPNGARSNRGTKHGYWKATGKNRSITS-TTRS 107 9****************************.99***************6347788999**************************************.9999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kktLvfykg+ap+ge+tdWvmhey+l PK11281.3 108 VGVKKTLVFYKGHAPQGERTDWVMHEYTL 136 ***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-58 | 5 | 159 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.669 | 9 | 159 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-27 | 10 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 636 aa Download sequence Send to blast |
MVFSDDHDCP PGFRFYPTDE ELVLYYLKRK ICGKKLRLNV IGETDVYKFE PEELPGMSIL 60 KTGDRQWFFF SPRDRKHPNG ARSNRGTKHG YWKATGKNRS ITSTTRSVGV KKTLVFYKGH 120 APQGERTDWV MHEYTLDEEE LKRCQNLQDY YALYKVFKKS GLGPKNGEQY GAPFREEEWN 180 ADCPDFNRSA IVETPVERVD GALSNVESQE TIVDSQKSLS DEIEELLQQM TDEPLLDLPE 240 VKDYADNTPP QSQVLSNNDM QSNLVDSHSR EISFEEPVDS LHASGVQHNV EANFEHTQSD 300 ISQLQFHVPS EVAFSLNIHE QEVYVLPVED FIEMDDLFGP EPTTTDAEKP LENFQFEEVD 360 GLSELDLFHD ATMFLNDMGV DDDRSRISHQ YVHSLEQNVV NSYQYRRNSE QVGEDEDVSQ 420 LLFEVADQNT NLYYLQGSDQ HTSLLHLEGT GQVNNHMYLE GTDPINNLLY QDIANQMNHQ 480 YQFQPDNQER SVFTSAEFDA GSHPNSSSVC DTSTLSLQPT QNQSGNDNSG NNSWFSSTLW 540 SFVESIPTTP ASAAENALVN RAFERMSSFS RLRINAAVNA TTVPAGSDSE TVKSPPRNRG 600 FIFFPILVIV IAILWVVLGT VKLWGSSSSN STSIAS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 7e-49 | 10 | 165 | 21 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-49 | 10 | 165 | 21 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-49 | 10 | 165 | 21 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-49 | 10 | 165 | 21 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-49 | 10 | 165 | 21 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-49 | 10 | 165 | 21 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-49 | 10 | 165 | 21 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-49 | 10 | 165 | 21 | 174 | NAC domain-containing protein 19 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010094888.1 | 0.0 | NAC domain-containing protein 17 | ||||
TrEMBL | A0A2P5FR66 | 0.0 | A0A2P5FR66_TREOI; NAC domain containing protein | ||||
STRING | XP_010094888.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6131 | 34 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34190.1 | 1e-125 | NAC domain containing protein 17 |