PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK11147.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family NF-YA
Protein Properties Length: 335aa    MW: 36747.4 Da    PI: 8.2574
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK11147.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.61.8e-32169225158
  CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                +ep+YVNaKQy++Il+RRq+Rak+e ekk  +k+rkpylheSRh+hA+rR+Rg+gGrF
  PK11147.1 169 EEPVYVNAKQYHGILRRRQSRAKAELEKKA-IKGRKPYLHESRHQHAMRRARGCGGRF 225
                69***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.3E-36167228IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.443168228IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.0E-27170225IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.9E-24171193IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860173193IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.9E-24202225IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MPGKAEHEER RPQLSGSNVF QTSVYSQPWW REMGTNNTGT AIGESETTSK SSFVVEHANG  60
RVVDDGGDGA NYHKEVSATT ASQSDGTNGS EHHAKTAPSS TMLTMGEHLD PNAQMELVGH  120
SIVLTPYPYG DPNYGGVMTP YGPQPMVPPH LYGMYPTPGR MPLPLEMEEE PVYVNAKQYH  180
GILRRRQSRA KAELEKKAIK GRKPYLHESR HQHAMRRARG CGGRFLNTKK ADDNAVSSTS  240
ENGSNSNGNQ STQSTRDRNV DSSSIQKGRP GSMVEDMEKM QTHSNGNGKS NNNNGHGLSS  300
AYDLRFTDDQ EVDCLGRERK SMRLNGSTHG AISIK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-20169232265NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015881708.11e-130nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_015881709.11e-130nuclear transcription factor Y subunit A-1-like isoform X2
TrEMBLA0A2P5DLP21e-171A0A2P5DLP2_PARAD; Nuclear transcription factor Y subunit A
STRINGXP_010088228.11e-132(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89623144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.42e-38nuclear factor Y, subunit A1