PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK11000.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family GATA
Protein Properties Length: 266aa    MW: 28651.8 Da    PI: 6.7579
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK11000.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.95e-17222258135
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C+nCgt++  Tp++Rrgp g +tLCnaCGl+++ kg+
  PK11000.1 222 CTNCGTSSksTPMMRRGPAGARTLCNACGLKWANKGV 258
                **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132014.91182117IPR010399Tify domain
SMARTSM009791.6E-1282117IPR010399Tify domain
PfamPF062001.3E-1285116IPR010399Tify domain
PfamPF062033.0E-16149191IPR010402CCT domain
PROSITE profilePS5101713.205149191IPR010402CCT domain
PROSITE profilePS5011410.831216266IPR000679Zinc finger, GATA-type
SMARTSM004011.2E-9216265IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-11219264No hitNo description
Gene3DG3DSA:3.30.50.101.8E-16220263IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.39E-15221265No hitNo description
PfamPF003201.1E-14222258IPR000679Zinc finger, GATA-type
PROSITE patternPS003440222249IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MSESNQEASM YGRGAMANNN MHSGGGGHGD EEDDEVTGAE ESIDNPQLRY EDGGCVGAMN  60
GVQDVPSNVL YVPNSEYPPV AENGGSDQLT LSFQGEVYVF DAVSPDKVQA VLLLLGGYEI  120
PSGIPAMGTA PLNQRAVNQF VSKPVQPHRA ASLNRFREKR KERCFDKKIR YTVRKEVAMR  180
MQRKKGQFTS SKASSDEAGS AVIVWNGAQG SGQDESMQET SCTNCGTSSK STPMMRRGPA  240
GARTLCNACG LKWANKGVLR DLKVPX
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00369DAPTransfer from AT3G21175Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010112233.11e-150GATA transcription factor 28
SwissprotQ8GXL77e-72GAT24_ARATH; GATA transcription factor 24
TrEMBLA0A2P5FKR31e-164A0A2P5FKR3_TREOI; GATA transcription factor
STRINGXP_010112233.11e-149(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.28e-76ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]