PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PK10827.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Dof

Protein Properties

Length: 486aa MW: 53915.8 Da PI: 5.7852

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK10827.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	119.7	1.1e-37	114	175	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ++k+l+cprC+s tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grr+nk+sss PK10827.1 114 PDKILPCPRCNSLGTKFCYFNNYNVNQPRHFCKNCQRYWTAGGTIRNVPVGAGRRRNKHSSS 175 68999*****************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-29	102	171	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.3E-30	116	172	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.416	118	172	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	120	156	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence Send to blast
XMSLSQSQLT DPAIKLFGTN IPLPPSNSSS ETSHSDDSPL SQSQFMDECR EEATKAEVED 60 TGERCCEHDS FSDSEGKGNS YQNHVQENEV NCNPVEYQRS ESDRSSKEKI LKRPDKILPC 120 PRCNSLGTKF CYFNNYNVNQ PRHFCKNCQR YWTAGGTIRN VPVGAGRRRN KHSSSQLHQE 180 TTNDSAAVVT QEDINNATSD QSPPSNRFPA SARLDNGMAE GLKFSSETPL CESMETKLNI 240 EDHKKSEIES AAFGDSSEDL SLSSNSLNAH SSQNSSCFRR EDDSADHRHP MQCYPVPQWA 300 YPWNPGWSVM MVGQNDSNPN PSNVGTLPMV SIPGFSAPNT PFPFLPASYW GYMPNWDTQN 360 WTQPINRYSG NMPPSSSTVN TNSSSNSSAI LGKHSRDTNM QAEEKTGQRL WVPKTLRIDD 420 PDKAAKSSIW STLGIKPDKN TPIIRGGIFK AFQPKSDANS RSLDADQVLQ SNPAALSRSH 480 SFEEST

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence Send to blast

XMSLSQSQLT DPAIKLFGTN IPLPPSNSSS ETSHSDDSPL SQSQFMDECR EEATKAEVED  60
TGERCCEHDS FSDSEGKGNS YQNHVQENEV NCNPVEYQRS ESDRSSKEKI LKRPDKILPC  120
PRCNSLGTKF CYFNNYNVNQ PRHFCKNCQR YWTAGGTIRN VPVGAGRRRN KHSSSQLHQE  180
TTNDSAAVVT QEDINNATSD QSPPSNRFPA SARLDNGMAE GLKFSSETPL CESMETKLNI  240
EDHKKSEIES AAFGDSSEDL SLSSNSLNAH SSQNSSCFRR EDDSADHRHP MQCYPVPQWA  300
YPWNPGWSVM MVGQNDSNPN PSNVGTLPMV SIPGFSAPNT PFPFLPASYW GYMPNWDTQN  360
WTQPINRYSG NMPPSSSTVN TNSSSNSSAI LGKHSRDTNM QAEEKTGQRL WVPKTLRIDD  420
PDKAAKSSIW STLGIKPDKN TPIIRGGIFK AFQPKSDANS RSLDADQVLQ SNPAALSRSH  480
SFEEST

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024024457.1	0.0	cyclic dof factor 2
TrEMBL	A0A2P5CDN6	0.0	A0A2P5CDN6_TREOI; Zinc finger, Dof-type
STRING	XP_010086689.1	1e-168	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3502	31	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	7e-62	cycling DOF factor 2