PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PK10616.1
Organism
Cannabis sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
Family WRKY
Protein Properties Length: 345aa    MW: 38793.3 Da    PI: 6.2318
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PK10616.1genomeCCBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY893.9e-28120180259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                +Dg++WrKYGqK++ g+++prsY+rCt++   gC ++k+v+rs++dp++v+itY+g+H+++
  PK10616.1 120 EDGHSWRKYGQKDILGANHPRSYFRCTHRktqGCLATKQVQRSDQDPSFVDITYKGHHTCR 180
                8***************************98999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.85114177IPR003657WRKY domain
Gene3DG3DSA:2.20.25.807.8E-28115180IPR003657WRKY domain
SuperFamilySSF1182907.06E-25118180IPR003657WRKY domain
SMARTSM007741.3E-40119181IPR003657WRKY domain
PfamPF031062.7E-26120180IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0048527Biological Processlateral root development
GO:0005730Cellular Componentnucleolus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEKNMDFEQN TLVNELMEGK ELAKQLMGHL QPSSSHEARD VLVEKILSSY EKALSVLNWD  60
GKSKPLGLES SPCSFGNTSP RSVIIDQDTN HRDVFKKRKI TVRSEQVRVP LGTGAEGNLE  120
DGHSWRKYGQ KDILGANHPR SYFRCTHRKT QGCLATKQVQ RSDQDPSFVD ITYKGHHTCR  180
RASQPAIVAS SSLTKKNHFP HNEVVVKEDK IRQSQVKPFT LEVKTEDLDT REDHMFAPFS  240
FPSTPIESEH NHFFSEMIET DFAGGFSSPF ISPATSDSAY FSVSPCHKMT SFGLANNVQT  300
PESDLTEILS APTSLTNSPM GDLDLTLHNV DFEMNFPFDS PEFFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-22118180769OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00112ampDAPTransfer from AT2G46400Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010095789.11e-141probable WRKY transcription factor 46
TrEMBLA0A2P5DTC41e-173A0A2P5DTC4_TREOI; WRKY domain containing protein
STRINGXP_010095789.11e-140(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49334157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.14e-54WRKY DNA-binding protein 46