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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | PK10359.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis
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Family | bZIP | ||||||||
Protein Properties | Length: 157aa MW: 17219.1 Da PI: 8.5128 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 80 | 2.8e-25 | 64 | 126 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ +v++L++eN++L++el++l++e++kl+se+ PK10359.1 64 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVETLSNENRSLRDELQKLSEECQKLTSEN 126 89***********************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 2.1E-20 | 59 | 123 | No hit | No description |
SMART | SM00338 | 1.8E-22 | 64 | 128 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.1E-22 | 64 | 126 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 13.334 | 66 | 129 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.81E-13 | 67 | 123 | No hit | No description |
CDD | cd14702 | 1.21E-18 | 69 | 120 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 71 | 86 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
VSGKPVGSMP ATNLNIGMDL WNASSGGGGA TKLRPNPSGA SSSAASASMI GREGVMPDQW 60 VQDERELKRQ KRKQSNRESA RRSRLRKQAE CEELQARVET LSNENRSLRD ELQKLSEECQ 120 KLTSENGSIK EELSRLCGPE VIANLDHHQT RSGESNS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 80 | 86 | RRSRLRK |
2 | 80 | 87 | RRSRLRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024023592.1 | 1e-83 | G-box-binding factor 1 isoform X2 | ||||
Swissprot | P42774 | 5e-44 | GBF1_ARATH; G-box-binding factor 1 | ||||
TrEMBL | A0A2P5AIE3 | 7e-93 | A0A2P5AIE3_PARAD; Basic-leucine zipper transcription factor | ||||
STRING | XP_010099832.1 | 5e-83 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5933 | 34 | 50 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36730.2 | 9e-46 | G-box binding factor 1 |