PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Binding Motif |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PK10342.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

G2-like

Protein Properties

Length: 148aa MW: 16562.2 Da PI: 9.5011

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK10342.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109.9	1.3e-34	83	137	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl PK10342.1 83 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 137 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.485	80	140	IPR017930	Myb domain
SuperFamily	SSF46689	1.79E-18	82	138	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	5.3E-33	82	138	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.9E-26	83	138	IPR006447	Myb domain, plants
Pfam	PF00249	3.2E-10	85	136	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
XYIHNNHTHT YSFIITHEKT QASIVPNRRA GAWTETISVR FQICEAAPST DICVHGRHLD 60 SGVNTMDPVN GGNSLNNPSL ASKQRLRWTH ELHERFVDAV AQLGGPDRAT PKGVLRVMGV 120 QGLTIYHVKS HLQKYRLAKY LPESSSDX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	9e-26	83	140	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-26	83	140	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-26	83	140	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-26	83	140	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00628	PBM	25215497	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010096513.1	1e-58	myb family transcription factor PHL7 isoform X1
Refseq	XP_021637722.1	4e-59	myb family transcription factor PHL7-like
Refseq	XP_024021465.1	1e-58	myb family transcription factor PHL7 isoform X2
Swissprot	Q9SJW0	4e-42	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	W9RQE9	3e-57	W9RQE9_9ROSA; Myb family transcription factor APL
STRING	XP_010096513.1	6e-58	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8610	33	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-44	G2-like family protein