PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

PK09728.1

Organism

Cannabis sativa

Taxonomic ID

3483

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Cannabaceae; Cannabis

Family

Protein Properties

Length: 157aa MW: 17850.5 Da PI: 4.591

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PK09728.1	genome	CCBR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	35.4	1.9e-11	68	126	37	96
EEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 37 tledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 + + + ++W++ + +++s+ + + Wk+F+++n+L+ +D +vF+l+++s+++lv+kv PK09728.1 68 AVLTYKRNKWTMLF--NGTSQLlKRFDNSWKNFAEDNKLEINDACVFELIENSSTNLVFKV 126 456678899**9..99998777899***********************999999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	3.3E-13	29	130	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	9.61E-15	31	126	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.47E-14	34	130	No hit	No description
SMART	SM01019	3.3E-4	35	132	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	9.686	36	132	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.9E-9	42	126	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 157 aa Download sequence Send to blast
MDELLSNESS NRSTTCNEEG EEDEELCPIS GKNPFFSLFM SKSNLNPNYR LVLPAKIHPV 60 LPSLIIPAVL TYKRNKWTML FNGTSQLLKR FDNSWKNFAE DNKLEINDAC VFELIENSST 120 NLVFKVQILR GDLPTELLPK IIETKMVGTV ESPIVIE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010097681.1	9e-47	B3 domain-containing protein Os04g0386900
TrEMBL	A0A2P5CRU4	2e-47	A0A2P5CRU4_PARAD; B3 DNA binding domain containing protein
STRING	XP_010097681.1	4e-46	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9722	26	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33280.1	5e-07	B3 family protein